Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01009264.1 Corchorus olitorius cultivar O-4 contig09293, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 615

Length: 1026
ACGTcount: A:0.26, C:0.22, G:0.21, T:0.31


Found at i:167 original size:24 final size:24

Alignment explanation


    Indices: 140--188  Score: 98
    Period size: 24  Copynumber: 2.0  Consensus size: 24

        130 CGGAACATTG

                                    
        140 GTAATATCAATGGAATCCTTTCCT
          1 GTAATATCAATGGAATCCTTTCCT

                                    
        164 GTAATATCAATGGAATCCTTTCCT
          1 GTAATATCAATGGAATCCTTTCCT

             
        188 G
          1 G

        189 GAGCTATATT


Statistics
Matches: 25,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  24   25  1.00

ACGTcount: A:0.29, C:0.20, G:0.14, T:0.37


Consensus pattern (24 bp):   
GTAATATCAATGGAATCCTTTCCT
Done.