Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01009265.1 Corchorus olitorius cultivar O-4 contig09294, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2253
ACGTcount: A:0.16, C:0.33, G:0.30, T:0.21


Found at i:921 original size:18 final size:18

Alignment explanation


    Indices: 872--922  Score: 66
    Period size: 18  Copynumber: 2.8  Consensus size: 18

        862 CCCGATGCGC

                   *     *  * 
        872 ACCACCATGGCCACGATG
          1 ACCACCACGGCCATGACG

                     *        
        890 ACCACCACGCCCATGACG
          1 ACCACCACGGCCATGACG

                           
        908 ACCACCACGGCCATG
          1 ACCACCACGGCCATG

        923 GCCACGATGC


Statistics
Matches: 28,  Mismatches: 5, Indels: 0
        0.85            0.15        0.00

Matches are distributed among these distances:
  18   28  1.00

ACGTcount: A:0.27, C:0.45, G:0.20, T:0.08


Consensus pattern (18 bp):   
ACCACCACGGCCATGACG
Done.