Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01009269.1 Corchorus olitorius cultivar O-4 contig09298, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 639

Length: 1066
ACGTcount: A:0.33, C:0.16, G:0.15, T:0.35


Found at i:69 original size:19 final size:19

Alignment explanation


    Indices: 41--80  Score: 62
    Period size: 19  Copynumber: 2.1  Consensus size: 19

         31 ATAATCCAGA

                 *      *      
         41 AATTATAAATTTCTAAAAT
          1 AATTAGAAATTTATAAAAT

                               
         60 AATTAGAAATTTATAAAAT
          1 AATTAGAAATTTATAAAAT

              
         79 AA
          1 AA

         81 AGTAAAAGCG


Statistics
Matches: 19,  Mismatches: 2, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  19   19  1.00

ACGTcount: A:0.57, C:0.03, G:0.03, T:0.38


Consensus pattern (19 bp):   
AATTAGAAATTTATAAAAT

Found at i:753 original size:21 final size:21

Alignment explanation


    Indices: 727--811  Score: 170
    Period size: 21  Copynumber: 4.0  Consensus size: 21

        717 AATATACTTA

                                 
        727 TTCGATCTAATAAGTATCTTG
          1 TTCGATCTAATAAGTATCTTG

                                 
        748 TTCGATCTAATAAGTATCTTG
          1 TTCGATCTAATAAGTATCTTG

                                 
        769 TTCGATCTAATAAGTATCTTG
          1 TTCGATCTAATAAGTATCTTG

                                 
        790 TTCGATCTAATAAGTATCTTG
          1 TTCGATCTAATAAGTATCTTG

             
        811 T
          1 T

        812 ATCAGAATTT


Statistics
Matches: 64,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  21   64  1.00

ACGTcount: A:0.28, C:0.14, G:0.14, T:0.44


Consensus pattern (21 bp):   
TTCGATCTAATAAGTATCTTG

Done.