Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01009274.1 Corchorus olitorius cultivar O-4 contig09303, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 714

Length: 1190
ACGTcount: A:0.26, C:0.21, G:0.16, T:0.36


Found at i:437 original size:16 final size:16

Alignment explanation


    Indices: 416--446  Score: 53
    Period size: 16  Copynumber: 1.9  Consensus size: 16

        406 AGAAAGAATA

                            
        416 TTTCAATCTTTTAATC
          1 TTTCAATCTTTTAATC

                   *       
        432 TTTCAATTTTTTAAT
          1 TTTCAATCTTTTAAT

        447 TATTTCTGAA


Statistics
Matches: 14,  Mismatches: 1, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  16   14  1.00

ACGTcount: A:0.26, C:0.13, G:0.00, T:0.61


Consensus pattern (16 bp):   
TTTCAATCTTTTAATC
Done.