Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01009275.1 Corchorus olitorius cultivar O-4 contig09304, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1785
ACGTcount: A:0.32, C:0.20, G:0.16, T:0.32


Found at i:1397 original size:32 final size:35

Alignment explanation


    Indices: 1361--1428  Score: 97
    Period size: 36  Copynumber: 2.0  Consensus size: 35

       1351 GGTTTTGGGT

                                               
       1361 TTTTTCTTTTTTAC-CT-A-TTTAGGTTTAATTTC
          1 TTTTTCTTTTTTACACTAAGTTTAGGTTTAATTTC

                 *                              
       1393 TTTTTTTTTTTTACACTAATGTTTAGGTTTAATTTC
          1 TTTTTCTTTTTTACACTAA-GTTTAGGTTTAATTTC

       1429 ATTTAAGTTT


Statistics
Matches: 31,  Mismatches: 1, Indels: 4
        0.86            0.03        0.11

Matches are distributed among these distances:
  32   13  0.42
  33    2  0.06
  34    1  0.03
  36   15  0.48

ACGTcount: A:0.18, C:0.10, G:0.07, T:0.65


Consensus pattern (35 bp):   
TTTTTCTTTTTTACACTAAGTTTAGGTTTAATTTC
Done.