Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01009279.1 Corchorus olitorius cultivar O-4 contig09308, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 817

Length: 1362
ACGTcount: A:0.25, C:0.18, G:0.25, T:0.32


Found at i:950 original size:29 final size:29

Alignment explanation


    Indices: 908--963  Score: 112
    Period size: 29  Copynumber: 1.9  Consensus size: 29

        898 CGAAGTTAGA

                                         
        908 ACTAAGAAGAATTCTTTGGGCTTATATGG
          1 ACTAAGAAGAATTCTTTGGGCTTATATGG

                                       
        937 ACTAAGAAGAATTCTTTGGGCTTATAT
          1 ACTAAGAAGAATTCTTTGGGCTTATAT

        964 AGAGAGTCTT


Statistics
Matches: 27,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  29   27  1.00

ACGTcount: A:0.32, C:0.11, G:0.21, T:0.36


Consensus pattern (29 bp):   
ACTAAGAAGAATTCTTTGGGCTTATATGG
Done.