Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01000928.1 Corchorus olitorius cultivar O-4 contig00928, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 835

Length: 1393
ACGTcount: A:0.43, C:0.11, G:0.10, T:0.35


Found at i:843 original size:29 final size:28

Alignment explanation


    Indices: 811--873  Score: 72
    Period size: 28  Copynumber: 2.2  Consensus size: 28

        801 TATAAGGATA

                           *             
        811 TTAGATTTAATTAAATAAAAATAGAGTTT
          1 TTAG-TTTAATTAAACAAAAATAGAGTTT

                   **   **              
        840 TTAGTTTTTTTACCCAAAAATAGAGTTT
          1 TTAGTTTAATTAAACAAAAATAGAGTTT

                  
        868 TTAGTT
          1 TTAGTT

        874 GAGTAAAACT


Statistics
Matches: 29,  Mismatches: 5, Indels: 1
        0.83            0.14        0.03

Matches are distributed among these distances:
  28   25  0.86
  29    4  0.14

ACGTcount: A:0.38, C:0.05, G:0.11, T:0.46


Consensus pattern (28 bp):   
TTAGTTTAATTAAACAAAAATAGAGTTT
Done.