Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01009284.1 Corchorus olitorius cultivar O-4 contig09313, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 696

Length: 1161
ACGTcount: A:0.35, C:0.17, G:0.14, T:0.33

Warning! 1 characters in sequence are not A, C, G, or T


Found at i:940 original size:13 final size:13

Alignment explanation


    Indices: 922--947  Score: 52
    Period size: 13  Copynumber: 2.0  Consensus size: 13

        912 AATATTCTAC

                         
        922 TAAAAAAATAAAA
          1 TAAAAAAATAAAA

                         
        935 TAAAAAAATAAAA
          1 TAAAAAAATAAAA

        948 GTGGGTAAAA


Statistics
Matches: 13,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   13  1.00

ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15


Consensus pattern (13 bp):   
TAAAAAAATAAAA
Done.