Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01009307.1 Corchorus olitorius cultivar O-4 contig09337, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 728

Length: 1214
ACGTcount: A:0.29, C:0.22, G:0.21, T:0.29


Found at i:562 original size:19 final size:19

Alignment explanation


    Indices: 538--575  Score: 76
    Period size: 19  Copynumber: 2.0  Consensus size: 19

        528 AGCCTTCCTG

                               
        538 TTTGTTCGGCAAAGAAAGT
          1 TTTGTTCGGCAAAGAAAGT

                               
        557 TTTGTTCGGCAAAGAAAGT
          1 TTTGTTCGGCAAAGAAAGT

        576 CTGTACGCCT


Statistics
Matches: 19,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  19   19  1.00

ACGTcount: A:0.32, C:0.11, G:0.26, T:0.32


Consensus pattern (19 bp):   
TTTGTTCGGCAAAGAAAGT

Found at i:1109 original size:23 final size:23

Alignment explanation


    Indices: 1079--1124  Score: 92
    Period size: 23  Copynumber: 2.0  Consensus size: 23

       1069 TGACTACCAT

                                   
       1079 GGCAAGTAAGACACGAATGGAGG
          1 GGCAAGTAAGACACGAATGGAGG

                                   
       1102 GGCAAGTAAGACACGAATGGAGG
          1 GGCAAGTAAGACACGAATGGAGG

       1125 TATGTTTCAC


Statistics
Matches: 23,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  23   23  1.00

ACGTcount: A:0.39, C:0.13, G:0.39, T:0.09


Consensus pattern (23 bp):   
GGCAAGTAAGACACGAATGGAGG
Done.