Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01009314.1 Corchorus olitorius cultivar O-4 contig09344, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 826

Length: 1378
ACGTcount: A:0.25, C:0.20, G:0.22, T:0.33


Found at i:37 original size:25 final size:25

Alignment explanation


    Indices: 3--53  Score: 102
    Period size: 25  Copynumber: 2.0  Consensus size: 25

          1 AG

                                     
          3 CATCGGGATGTGCAGTTTATTCATA
          1 CATCGGGATGTGCAGTTTATTCATA

                                     
         28 CATCGGGATGTGCAGTTTATTCATA
          1 CATCGGGATGTGCAGTTTATTCATA

             
         53 C
          1 C

         54 GGAGATTGTT


Statistics
Matches: 26,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  25   26  1.00

ACGTcount: A:0.24, C:0.18, G:0.24, T:0.35


Consensus pattern (25 bp):   
CATCGGGATGTGCAGTTTATTCATA
Done.