Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01009316.1 Corchorus olitorius cultivar O-4 contig09346, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 666

Length: 1111
ACGTcount: A:0.35, C:0.16, G:0.16, T:0.33


Found at i:490 original size:21 final size:21

Alignment explanation


    Indices: 464--548  Score: 170
    Period size: 21  Copynumber: 4.0  Consensus size: 21

        454 AAATTCTGAT

                                 
        464 ACAAGATACTTATTAGATCGA
          1 ACAAGATACTTATTAGATCGA

                                 
        485 ACAAGATACTTATTAGATCGA
          1 ACAAGATACTTATTAGATCGA

                                 
        506 ACAAGATACTTATTAGATCGA
          1 ACAAGATACTTATTAGATCGA

                                 
        527 ACAAGATACTTATTAGATCGA
          1 ACAAGATACTTATTAGATCGA

             
        548 A
          1 A

        549 TAAGTATATT


Statistics
Matches: 64,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  21   64  1.00

ACGTcount: A:0.44, C:0.14, G:0.14, T:0.28


Consensus pattern (21 bp):   
ACAAGATACTTATTAGATCGA

Done.