Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01009331.1 Corchorus olitorius cultivar O-4 contig09361, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 624

Length: 1041
ACGTcount: A:0.21, C:0.25, G:0.16, T:0.37

Warning! 1 characters in sequence are not A, C, G, or T


Found at i:682 original size:21 final size:21

Alignment explanation


    Indices: 658--701  Score: 88
    Period size: 21  Copynumber: 2.1  Consensus size: 21

        648 ACGGCCCAAG

                                 
        658 ATCTTCACCTGCTGTTCTCTT
          1 ATCTTCACCTGCTGTTCTCTT

                                 
        679 ATCTTCACCTGCTGTTCTCTT
          1 ATCTTCACCTGCTGTTCTCTT

              
        700 AT
          1 AT

        702 GGATCCCTCT


Statistics
Matches: 23,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  21   23  1.00

ACGTcount: A:0.11, C:0.32, G:0.09, T:0.48


Consensus pattern (21 bp):   
ATCTTCACCTGCTGTTCTCTT
Done.