Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01009335.1 Corchorus olitorius cultivar O-4 contig09365, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 777

Length: 1295
ACGTcount: A:0.22, C:0.19, G:0.18, T:0.40


Found at i:288 original size:154 final size:154

Alignment explanation


    Indices: 1--1295  Score: 1930
    Period size: 154  Copynumber: 8.4  Consensus size: 154

                                 ** *               *                *       
          1 GGCCTATCGGGGCCCATTAGTGACATTTTGAATCGTCTTCTATTTGGCAAACCTCAAGGCTTTTC
          1 GGCCTATCGGGGCCCATTAGTTCCGTTTTGAATCGTCTTCGATTTGGCAAACCTCAATGCTTTTC

                            *   *   *              *                         
         66 TTTCCATTGTTTATGGCCTATCTAAAATCATTTTGGTGACATTAGTCCACTGTGAAGTTTTTAGC
         66 TTTCCATTGTTTATGGACTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGC

                     *              
        131 TCATTTGGATCACTTGTTATTTTG
        131 TCATTTGGAACACTTGTTATTTTG

             *      *                           *                            
        155 GACCTATCAGGGCCCATTAGTTCCGTTTTGAATCGTATTCGATTTGGCAAACCTCAATGCTTTTC
          1 GGCCTATCGGGGCCCATTAGTTCCGTTTTGAATCGTCTTCGATTTGGCAAACCTCAATGCTTTTC

                    *                     *                            *   * 
        220 TTTCCATTTTTTATGGACTAACTATAATCAATTTGGTGAGATTAGTCCACTGTGAAGTTCTTACC
         66 TTTCCATTGTTTATGGACTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGC

                     *   *         *
        285 TCATTTGGATCACATGTTATTTTT
        131 TCATTTGGAACACTTGTTATTTTG

                                 ** *                                *       
        309 GGCCTATCGGGGCCCATTAGTGACATTTTGAATCGTCTTCGATTTGGCAAACCTCAAAGCTTTTC
          1 GGCCTATCGGGGCCCATTAGTTCCGTTTTGAATCGTCTTCGATTTGGCAAACCTCAATGCTTTTC

               *    *                                               *        
        374 TTTTCATTTTTTATGGACTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAATTTTTAGC
         66 TTTCCATTGTTTATGGACTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGC

                                   *
        439 TCATTTGGAACACTTGTTATTTTA
        131 TCATTTGGAACACTTGTTATTTTG

                                    *                                        
        463 GGCCTATCGGGGCCCATTAGTTCCATTTTGAATCGTCTTCGATTTGGCAAACCTCAATGCTTTTC
          1 GGCCTATCGGGGCCCATTAGTTCCGTTTTGAATCGTCTTCGATTTGGCAAACCTCAATGCTTTTC

                                                          *   *     *        
        528 TTTCCATTGTTTATGGACTAACTATAATCATTTTGGTGAGATTAGTTCACCGTGAAATTTTTAGC
         66 TTTCCATTGTTTATGGACTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGC

                      *             
        593 TCATTTGGAATACTTGTTATTTTG
        131 TCATTTGGAACACTTGTTATTTTG

                              *  ****                     *          * *     
        617 GGCCTATCGGGGCCCATTTGTGATATTTTGAATCGTCTTCGATTTGCCAAACCTCAAGGATTTTC
          1 GGCCTATCGGGGCCCATTAGTTCCGTTTTGAATCGTCTTCGATTTGGCAAACCTCAATGCTTTTC

                            *                        *                       
        682 TTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGAATAGTCCACTGTGAAG-TTTTAGC
         66 TTTCCATTGTTTATGGACTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGC

                                    
        746 TCATTTGGAACACTTGTTATTTTG
        131 TCATTTGGAACACTTGTTATTTTG

                *                        *                                   
        770 GGCCAATCGGGGCCCATTAGTTCCGTTTTCAATCGTCTTCGATTTGGCAAACCTCAATGCTTTTC
          1 GGCCTATCGGGGCCCATTAGTTCCGTTTTGAATCGTCTTCGATTTGGCAAACCTCAATGCTTTTC

                                                                             
        835 TTTCCATTGTTTATGGACTAACTATAATCATTTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAG
         66 TTTCCATTGTTTATGGACTAACTATAATCA-TTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAG

                       *             
        900 CTCATTTGGAATACTTGTTATTTTG
        130 CTCATTTGGAACACTTGTTATTTTG

                               *      *                          *           
        925 GGCCTATCGGGGCCCATTAATTCCGTATTGAATCGTCTTCGATTTGGCAAACCACAATGCTTTTC
          1 GGCCTATCGGGGCCCATTAGTTCCGTTTTGAATCGTCTTCGATTTGGCAAACCTCAATGCTTTTC

                *                                               *           *
        990 TTTCAATTGTTTATGG-CATAACTATAATCATTTTGGTGAGATTAGTCCACTATGAAGTTTTTAA
         66 TTTCCATTGTTTATGGAC-TAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAG

            *     *                  
       1054 ATCATTCGGAACACTTGTTATTTTG
        130 CTCATTTGGAACACTTGTTATTTTG

                  *      *                     *      *           *          
       1079 GGCCTAACGGGGCTCATTAGTTCCGTTTTGAATCGCCTTCGACTTGGCAAACCTTAATGCTTTTC
          1 GGCCTATCGGGGCCCATTAGTTCCGTTTTGAATCGTCTTCGATTTGGCAAACCTCAATGCTTTTC

                           *                                         *       
       1144 TTTCCATTGTTTAT-CACCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAACTTTTTAG
         66 TTTCCATTGTTTATGGA-CTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAG

            *   *                    
       1208 GTCAGTTGGAACACTTGTTATTTTG
        130 CTCATTTGGAACACTTGTTATTTTG

                            *      *    *          *                 *     
       1233 GGCCTATCGGGGCCCACTAGTTCTGTTTAGAATCGTCTTGGATTTGGCAAACCTCAACGCTTT
          1 GGCCTATCGGGGCCCATTAGTTCCGTTTTGAATCGTCTTCGATTTGGCAAACCTCAATGCTTT


Statistics
Matches: 1031,  Mismatches: 105, Indels: 10
        0.90            0.09        0.01

Matches are distributed among these distances:
 153  114  0.11
 154  799  0.77
 155  118  0.11

ACGTcount: A:0.22, C:0.19, G:0.18, T:0.40


Consensus pattern (154 bp):   
GGCCTATCGGGGCCCATTAGTTCCGTTTTGAATCGTCTTCGATTTGGCAAACCTCAATGCTTTTC
TTTCCATTGTTTATGGACTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGC
TCATTTGGAACACTTGTTATTTTG

Done.