Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01009353.1 Corchorus olitorius cultivar O-4 contig09383, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 660

Length: 1101
ACGTcount: A:0.24, C:0.19, G:0.24, T:0.33


Found at i:935 original size:19 final size:19

Alignment explanation


    Indices: 911--948  Score: 76
    Period size: 19  Copynumber: 2.0  Consensus size: 19

        901 GTTGAAAGGT

                               
        911 CTGGGAATCAATATTAGCA
          1 CTGGGAATCAATATTAGCA

                               
        930 CTGGGAATCAATATTAGCA
          1 CTGGGAATCAATATTAGCA

        949 ATGGTCATTC


Statistics
Matches: 19,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  19   19  1.00

ACGTcount: A:0.37, C:0.16, G:0.21, T:0.26


Consensus pattern (19 bp):   
CTGGGAATCAATATTAGCA
Done.