Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01009359.1 Corchorus olitorius cultivar O-4 contig09389, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 666

Length: 1111
ACGTcount: A:0.32, C:0.19, G:0.24, T:0.24


Found at i:323 original size:12 final size:12

Alignment explanation


    Indices: 306--332  Score: 54
    Period size: 12  Copynumber: 2.2  Consensus size: 12

        296 AGGAACCGCT

                        
        306 TCAAAATGATGG
          1 TCAAAATGATGG

                        
        318 TCAAAATGATGG
          1 TCAAAATGATGG

               
        330 TCA
          1 TCA

        333 TTTTCTGTAA


Statistics
Matches: 15,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  12   15  1.00

ACGTcount: A:0.41, C:0.11, G:0.22, T:0.26


Consensus pattern (12 bp):   
TCAAAATGATGG

Found at i:462 original size:25 final size:25

Alignment explanation


    Indices: 428--478  Score: 102
    Period size: 25  Copynumber: 2.0  Consensus size: 25

        418 TGCAGTCATG

                                     
        428 AGAAGTAGATGGTGGCAAAGAAAAC
          1 AGAAGTAGATGGTGGCAAAGAAAAC

                                     
        453 AGAAGTAGATGGTGGCAAAGAAAAC
          1 AGAAGTAGATGGTGGCAAAGAAAAC

             
        478 A
          1 A

        479 CCGGATCAAC


Statistics
Matches: 26,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  25   26  1.00

ACGTcount: A:0.49, C:0.08, G:0.31, T:0.12


Consensus pattern (25 bp):   
AGAAGTAGATGGTGGCAAAGAAAAC
Done.