Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01009361.1 Corchorus olitorius cultivar O-4 contig09391, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 864

Length: 1440
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.28


Found at i:545 original size:19 final size:19

Alignment explanation


    Indices: 521--558  Score: 76
    Period size: 19  Copynumber: 2.0  Consensus size: 19

        511 CACCGGCTAC

                               
        521 ATAAAGAAGACGCTATTCT
          1 ATAAAGAAGACGCTATTCT

                               
        540 ATAAAGAAGACGCTATTCT
          1 ATAAAGAAGACGCTATTCT

        559 GTCTGTCATG


Statistics
Matches: 19,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  19   19  1.00

ACGTcount: A:0.42, C:0.16, G:0.16, T:0.26


Consensus pattern (19 bp):   
ATAAAGAAGACGCTATTCT
Done.