Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01009367.1 Corchorus olitorius cultivar O-4 contig09397, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 643

Length: 1073
ACGTcount: A:0.32, C:0.21, G:0.23, T:0.24


Found at i:752 original size:32 final size:32

Alignment explanation


    Indices: 711--775  Score: 130
    Period size: 32  Copynumber: 2.0  Consensus size: 32

        701 TCAGAGTCCA

                                            
        711 TATCGGAACTTACAGGAGAGGGGACGAAGTAG
          1 TATCGGAACTTACAGGAGAGGGGACGAAGTAG

                                            
        743 TATCGGAACTTACAGGAGAGGGGACGAAGTAG
          1 TATCGGAACTTACAGGAGAGGGGACGAAGTAG

             
        775 T
          1 T

        776 GCTGAGACGT


Statistics
Matches: 33,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  32   33  1.00

ACGTcount: A:0.34, C:0.12, G:0.37, T:0.17


Consensus pattern (32 bp):   
TATCGGAACTTACAGGAGAGGGGACGAAGTAG

Found at i:945 original size:25 final size:26

Alignment explanation


    Indices: 911--966  Score: 105
    Period size: 25  Copynumber: 2.2  Consensus size: 26

        901 AAGGCGAAGA

                                      
        911 AGCAAAAGAAAGCACATG-AAACTGG
          1 AGCAAAAGAAAGCACATGAAAACTGG

                                      
        936 AGCAAAAGAAAGCACATGAAAACTGG
          1 AGCAAAAGAAAGCACATGAAAACTGG

                 
        962 AGCAA
          1 AGCAA

        967 CGGGTTGGTT


Statistics
Matches: 30,  Mismatches: 0, Indels: 1
        0.97            0.00        0.03

Matches are distributed among these distances:
  25   18  0.60
  26   12  0.40

ACGTcount: A:0.54, C:0.16, G:0.23, T:0.07


Consensus pattern (26 bp):   
AGCAAAAGAAAGCACATGAAAACTGG

Done.