Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01009369.1 Corchorus olitorius cultivar O-4 contig09399, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 834

Length: 1390
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.28


Found at i:897 original size:20 final size:20

Alignment explanation


    Indices: 872--912  Score: 82
    Period size: 20  Copynumber: 2.0  Consensus size: 20

        862 GACTGACATA

                                
        872 GGAAAGAGGGTCACCTAATG
          1 GGAAAGAGGGTCACCTAATG

                                
        892 GGAAAGAGGGTCACCTAATG
          1 GGAAAGAGGGTCACCTAATG

             
        912 G
          1 G

        913 CTGTTGTAAG


Statistics
Matches: 21,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  20   21  1.00

ACGTcount: A:0.34, C:0.15, G:0.37, T:0.15


Consensus pattern (20 bp):   
GGAAAGAGGGTCACCTAATG
Done.