Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01009382.1 Corchorus olitorius cultivar O-4 contig09413, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 826

Length: 1378
ACGTcount: A:0.31, C:0.22, G:0.21, T:0.25

Warning! 2 characters in sequence are not A, C, G, or T


Found at i:528 original size:27 final size:27

Alignment explanation


    Indices: 490--544  Score: 110
    Period size: 27  Copynumber: 2.0  Consensus size: 27

        480 TCTTCGACGA

                                       
        490 TAATAATAGGAAACCCTCATCGCACTT
          1 TAATAATAGGAAACCCTCATCGCACTT

                                       
        517 TAATAATAGGAAACCCTCATCGCACTT
          1 TAATAATAGGAAACCCTCATCGCACTT

             
        544 T
          1 T

        545 CCCTATAAAA


Statistics
Matches: 28,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  27   28  1.00

ACGTcount: A:0.36, C:0.25, G:0.11, T:0.27


Consensus pattern (27 bp):   
TAATAATAGGAAACCCTCATCGCACTT
Done.