Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01009383.1 Corchorus olitorius cultivar O-4 contig09414, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1733
ACGTcount: A:0.32, C:0.23, G:0.21, T:0.24

Warning! 1 characters in sequence are not A, C, G, or T


Found at i:770 original size:20 final size:20

Alignment explanation


    Indices: 745--784  Score: 80
    Period size: 20  Copynumber: 2.0  Consensus size: 20

        735 AGATATCCTC

                                
        745 TGTAATATAACCACATATGG
          1 TGTAATATAACCACATATGG

                                
        765 TGTAATATAACCACATATGG
          1 TGTAATATAACCACATATGG

        785 AGCAGTTAGA


Statistics
Matches: 20,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  20   20  1.00

ACGTcount: A:0.40, C:0.15, G:0.15, T:0.30


Consensus pattern (20 bp):   
TGTAATATAACCACATATGG
Done.