Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01009404.1 Corchorus olitorius cultivar O-4 contig09435, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 955

Length: 1593
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.29


Found at i:770 original size:29 final size:29

Alignment explanation


    Indices: 728--783  Score: 112
    Period size: 29  Copynumber: 1.9  Consensus size: 29

        718 TTATTTAGTT

                                         
        728 CTCTCCTTCTAGTCTCACCTCTTACGCTC
          1 CTCTCCTTCTAGTCTCACCTCTTACGCTC

                                       
        757 CTCTCCTTCTAGTCTCACCTCTTACGC
          1 CTCTCCTTCTAGTCTCACCTCTTACGC

        784 CCCTTTGCCT


Statistics
Matches: 27,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  29   27  1.00

ACGTcount: A:0.11, C:0.45, G:0.07, T:0.38


Consensus pattern (29 bp):   
CTCTCCTTCTAGTCTCACCTCTTACGCTC
Done.