Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01009414.1 Corchorus olitorius cultivar O-4 contig09445, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 877

Length: 1462
ACGTcount: A:0.16, C:0.33, G:0.35, T:0.15


Found at i:1182 original size:12 final size:12

Alignment explanation


    Indices: 1165--1206  Score: 66
    Period size: 12  Copynumber: 3.5  Consensus size: 12

       1155 CGTTGCCTGC

                   *    
       1165 GGCCGCGCACAA
          1 GGCCGCGAACAA

                  *     
       1177 GGCCGCAAACAA
          1 GGCCGCGAACAA

                        
       1189 GGCCGCGAACAA
          1 GGCCGCGAACAA

                  
       1201 GGCCGC
          1 GGCCGC

       1207 CCGCCTGACC


Statistics
Matches: 27,  Mismatches: 3, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  12   27  1.00

ACGTcount: A:0.29, C:0.38, G:0.33, T:0.00


Consensus pattern (12 bp):   
GGCCGCGAACAA
Done.