Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01009442.1 Corchorus olitorius cultivar O-4 contig09474, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 855

Length: 1425
ACGTcount: A:0.31, C:0.14, G:0.21, T:0.34


Found at i:200 original size:36 final size:36

Alignment explanation


    Indices: 128--213  Score: 93
    Period size: 36  Copynumber: 2.4  Consensus size: 36

        118 TGCTTAAAAA

                                     * *  **    
        128 TTCGAAATAATCGAAGCGGTAGTATTATCATTGAAG
          1 TTCGAAATAATCGAAGCGGTAGTATGAGCACCGAAG

                                          *      
        164 TTCGAAATAATCGAAGCGGT-GTACTGAGCGCCGAAG
          1 TTCGAAATAATCGAAGCGGTAGTA-TGAGCACCGAAG

              *  *        
        200 TTTGAGATAATCGA
          1 TTCGAAATAATCGA

        214 GGCTGTTTTG


Statistics
Matches: 42,  Mismatches: 7, Indels: 2
        0.82            0.14        0.04

Matches are distributed among these distances:
  35    3  0.07
  36   39  0.93

ACGTcount: A:0.34, C:0.14, G:0.26, T:0.27


Consensus pattern (36 bp):   
TTCGAAATAATCGAAGCGGTAGTATGAGCACCGAAG
Done.