Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01009454.1 Corchorus olitorius cultivar O-4 contig09486, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 641

Length: 1069
ACGTcount: A:0.32, C:0.16, G:0.19, T:0.33


Found at i:587 original size:21 final size:21

Alignment explanation


    Indices: 561--624  Score: 119
    Period size: 21  Copynumber: 3.0  Consensus size: 21

        551 GGAACCATGG

                         *       
        561 CATATATGTTTGGGATAGATT
          1 CATATATGTTTGGAATAGATT

                                 
        582 CATATATGTTTGGAATAGATT
          1 CATATATGTTTGGAATAGATT

                                 
        603 CATATATGTTTGGAATAGATT
          1 CATATATGTTTGGAATAGATT

             
        624 C
          1 C

        625 CGTTTTGAGA


Statistics
Matches: 42,  Mismatches: 1, Indels: 0
        0.98            0.02        0.00

Matches are distributed among these distances:
  21   42  1.00

ACGTcount: A:0.31, C:0.06, G:0.20, T:0.42


Consensus pattern (21 bp):   
CATATATGTTTGGAATAGATT
Done.