Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01009456.1 Corchorus olitorius cultivar O-4 contig09488, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 607

Length: 1013
ACGTcount: A:0.30, C:0.24, G:0.19, T:0.26

Warning! 1 characters in sequence are not A, C, G, or T


Found at i:334 original size:22 final size:22

Alignment explanation


    Indices: 306--350  Score: 90
    Period size: 22  Copynumber: 2.0  Consensus size: 22

        296 GAGTCCTACT

                                  
        306 CAATCTCTTAACTCGCTTAAGA
          1 CAATCTCTTAACTCGCTTAAGA

                                  
        328 CAATCTCTTAACTCGCTTAAGA
          1 CAATCTCTTAACTCGCTTAAGA

             
        350 C
          1 C

        351 CCGGAAGATA


Statistics
Matches: 23,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  22   23  1.00

ACGTcount: A:0.31, C:0.29, G:0.09, T:0.31


Consensus pattern (22 bp):   
CAATCTCTTAACTCGCTTAAGA
Done.