Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01009462.1 Corchorus olitorius cultivar O-4 contig09494, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 834

Length: 1391
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.30


Found at i:496 original size:30 final size:30

Alignment explanation


    Indices: 460--519  Score: 93
    Period size: 30  Copynumber: 2.0  Consensus size: 30

        450 CTCTATCCTT

                      **                  
        460 AGGCGAAGGGTTAAAAGAAGGTGAGCCGAA
          1 AGGCGAAGGGGGAAAAGAAGGTGAGCCGAA

                        *                 
        490 AGGCGAAGGGGGCAAAGAAGGTGAGCCGAA
          1 AGGCGAAGGGGGAAAAGAAGGTGAGCCGAA

        520 GGGGCGCTAT


Statistics
Matches: 27,  Mismatches: 3, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  30   27  1.00

ACGTcount: A:0.38, C:0.12, G:0.43, T:0.07


Consensus pattern (30 bp):   
AGGCGAAGGGGGAAAAGAAGGTGAGCCGAA
Done.