Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01009469.1 Corchorus olitorius cultivar O-4 contig09501, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 689

Length: 1149
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26


Found at i:765 original size:18 final size:18

Alignment explanation


    Indices: 742--795  Score: 108
    Period size: 18  Copynumber: 3.0  Consensus size: 18

        732 GGGGTTCAGG

                              
        742 ATCTATGTCTTCCATTGA
          1 ATCTATGTCTTCCATTGA

                              
        760 ATCTATGTCTTCCATTGA
          1 ATCTATGTCTTCCATTGA

                              
        778 ATCTATGTCTTCCATTGA
          1 ATCTATGTCTTCCATTGA

        796 CTTGCCTGAA


Statistics
Matches: 36,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  18   36  1.00

ACGTcount: A:0.22, C:0.22, G:0.11, T:0.44


Consensus pattern (18 bp):   
ATCTATGTCTTCCATTGA
Done.