Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01009471.1 Corchorus olitorius cultivar O-4 contig09503, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 677

Length: 1129
ACGTcount: A:0.26, C:0.17, G:0.17, T:0.40


Found at i:885 original size:27 final size:26

Alignment explanation


    Indices: 847--899  Score: 65
    Period size: 27  Copynumber: 2.0  Consensus size: 26

        837 AGATTTTTTT

                                        
        847 TATTGTATTATTTAA-ATTAATATTAAC
          1 TATTGTATTA-TTAATATTAA-ATTAAC

                                       
        874 TATTGT-TGTATTAATATTAAATTAAC
          1 TATTGTAT-TATTAATATTAAATTAAC

        900 GACGAGATTT


Statistics
Matches: 24,  Mismatches: 0, Indels: 5
        0.83            0.00        0.17

Matches are distributed among these distances:
  26   11  0.46
  27   13  0.54

ACGTcount: A:0.40, C:0.04, G:0.06, T:0.51


Consensus pattern (26 bp):   
TATTGTATTATTAATATTAAATTAAC
Done.