Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01009474.1 Corchorus olitorius cultivar O-4 contig09506, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 953

Length: 1589
ACGTcount: A:0.29, C:0.20, G:0.18, T:0.33


Found at i:1135 original size:22 final size:25

Alignment explanation


    Indices: 1110--1156  Score: 73
    Period size: 22  Copynumber: 2.0  Consensus size: 25

       1100 CTTTTTCATT

                                     
       1110 TTTAATATAA-TC-T-ATATATATA
          1 TTTAATATAATTCTTAATATATATA

                                     
       1132 TTTAATATAATTCTTAATATATATA
          1 TTTAATATAATTCTTAATATATATA

       1157 AGACATCCTC


Statistics
Matches: 22,  Mismatches: 0, Indels: 3
        0.88            0.00        0.12

Matches are distributed among these distances:
  22   10  0.45
  23    2  0.09
  24    1  0.05
  25    9  0.41

ACGTcount: A:0.45, C:0.04, G:0.00, T:0.51


Consensus pattern (25 bp):   
TTTAATATAATTCTTAATATATATA

Done.