Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01009486.1 Corchorus olitorius cultivar O-4 contig09518, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 661

Length: 1102
ACGTcount: A:0.32, C:0.22, G:0.22, T:0.24

Warning! 1 characters in sequence are not A, C, G, or T


Found at i:786 original size:2 final size:2

Alignment explanation


    Indices: 779--808  Score: 51
    Period size: 2  Copynumber: 14.5  Consensus size: 2

        769 TACGAAAAAG

                                                        
        779 TA TA TA TA TA TA TA TA TA TA TA TA TGA TA T
          1 TA TA TA TA TA TA TA TA TA TA TA TA T-A TA T

        809 GGTACCAAAA


Statistics
Matches: 27,  Mismatches: 0, Indels: 2
        0.93            0.00        0.07

Matches are distributed among these distances:
   2   25  0.93
   3    2  0.07

ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50


Consensus pattern (2 bp):   
TA

Done.