Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01009487.1 Corchorus olitorius cultivar O-4 contig09519, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 628

Length: 1048
ACGTcount: A:0.29, C:0.23, G:0.20, T:0.28

Warning! 1 characters in sequence are not A, C, G, or T


Found at i:165 original size:15 final size:15

Alignment explanation


    Indices: 117--166  Score: 55
    Period size: 15  Copynumber: 3.3  Consensus size: 15

        107 CACCCCTTCT

                           
        117 CCTTACGTCTCATCC
          1 CCTTACGTCTCATCC

                 * * * *  *
        132 CCTTAGGCCACTTCT
          1 CCTTACGTCTCATCC

                           
        147 CCTTACGTCTCATCC
          1 CCTTACGTCTCATCC

                 
        162 CCTTA
          1 CCTTA

        167 TACCCCTTAT


Statistics
Matches: 25,  Mismatches: 10, Indels: 0
        0.71            0.29        0.00

Matches are distributed among these distances:
  15   25  1.00

ACGTcount: A:0.14, C:0.44, G:0.08, T:0.34


Consensus pattern (15 bp):   
CCTTACGTCTCATCC

Found at i:182 original size:30 final size:30

Alignment explanation


    Indices: 108--174  Score: 107
    Period size: 30  Copynumber: 2.2  Consensus size: 30

         98 AAGAAGATTC

                                          
        108 ACCCCTTCTCCTTACGTCTCATCCCCTTAG
          1 ACCCCTTCTCCTTACGTCTCATCCCCTTAG

            *  *                         *
        138 GCCACTTCTCCTTACGTCTCATCCCCTTAT
          1 ACCCCTTCTCCTTACGTCTCATCCCCTTAG

                   
        168 ACCCCTT
          1 ACCCCTT

        175 ATTCTTACTC


Statistics
Matches: 32,  Mismatches: 5, Indels: 0
        0.86            0.14        0.00

Matches are distributed among these distances:
  30   32  1.00

ACGTcount: A:0.13, C:0.46, G:0.06, T:0.34


Consensus pattern (30 bp):   
ACCCCTTCTCCTTACGTCTCATCCCCTTAG
Done.