Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01000949.1 Corchorus olitorius cultivar O-4 contig00949, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 687

Length: 1145
ACGTcount: A:0.25, C:0.28, G:0.13, T:0.34


Found at i:811 original size:15 final size:15

Alignment explanation


    Indices: 793--823  Score: 53
    Period size: 15  Copynumber: 2.1  Consensus size: 15

        783 GCTGCATTAT

                       *   
        793 GGCCTCCACCAGTTG
          1 GGCCTCCACCACTTG

                           
        808 GGCCTCCACCACTTG
          1 GGCCTCCACCACTTG

             
        823 G
          1 G

        824 CCCAGCAGTT


Statistics
Matches: 15,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  15   15  1.00

ACGTcount: A:0.13, C:0.42, G:0.26, T:0.19


Consensus pattern (15 bp):   
GGCCTCCACCACTTG
Done.