Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01009505.1 Corchorus olitorius cultivar O-4 contig09537, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3724
ACGTcount: A:0.32, C:0.18, G:0.15, T:0.35


Found at i:411 original size:20 final size:21

Alignment explanation


    Indices: 373--413  Score: 57
    Period size: 21  Copynumber: 2.0  Consensus size: 21

        363 CTAGTCTCTT

                     *           
        373 TTTTTTTTTTACAATTTACAC
          1 TTTTTTTTTGACAATTTACAC

                      *          
        394 TTTTTTTTTGCCAA-TTACAC
          1 TTTTTTTTTGACAATTTACAC

        414 AGACTAGTCT


Statistics
Matches: 18,  Mismatches: 2, Indels: 1
        0.86            0.10        0.05

Matches are distributed among these distances:
  20    6  0.33
  21   12  0.67

ACGTcount: A:0.22, C:0.17, G:0.02, T:0.59


Consensus pattern (21 bp):   
TTTTTTTTTGACAATTTACAC
Done.