Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01009508.1 Corchorus olitorius cultivar O-4 contig09540, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6503
ACGTcount: A:0.34, C:0.18, G:0.18, T:0.30


Found at i:66 original size:23 final size:20

Alignment explanation


    Indices: 18--66  Score: 53
    Period size: 23  Copynumber: 2.3  Consensus size: 20

          8 TTTCCTGTGT

                                
         18 TCTTTTTTTTAATCTTTTTA
          1 TCTTTTTTTTAATCTTTTTA

            **                     
         38 GATTTTCTTTTAATTTCTTTTTA
          1 TCTTTT-TTTTAA--TCTTTTTA

                  
         61 TCTTTT
          1 TCTTTT

         67 AATAAGTATT


Statistics
Matches: 22,  Mismatches: 4, Indels: 3
        0.76            0.14        0.10

Matches are distributed among these distances:
  20    4  0.18
  21    6  0.27
  23   12  0.55

ACGTcount: A:0.14, C:0.10, G:0.02, T:0.73


Consensus pattern (20 bp):   
TCTTTTTTTTAATCTTTTTA
Done.