Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01009514.1 Corchorus olitorius cultivar O-4 contig09546, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 618

Length: 1030
ACGTcount: A:0.30, C:0.18, G:0.19, T:0.33


Found at i:494 original size:29 final size:30

Alignment explanation


    Indices: 457--533  Score: 84
    Period size: 29  Copynumber: 2.6  Consensus size: 30

        447 GGTATTCCTA

                                 *        
        457 ACACGTGGCATGCCACGTGCCCTTTTT-GT
          1 ACACGTGGCATGCCACGTGCCATTTTTAGT

             * *     *     *   *          
        486 ATATGTGGCGTGCCATGTGTCATTTTTAGT
          1 ACACGTGGCATGCCACGTGCCATTTTTAGT

            *                 
        516 GCACGTGGCATGCCACGT
          1 ACACGTGGCATGCCACGT

        534 CAGCCGCCGT


Statistics
Matches: 36,  Mismatches: 11, Indels: 1
        0.75            0.23        0.02

Matches are distributed among these distances:
  29   21  0.58
  30   15  0.42

ACGTcount: A:0.16, C:0.25, G:0.27, T:0.32


Consensus pattern (30 bp):   
ACACGTGGCATGCCACGTGCCATTTTTAGT

Found at i:751 original size:3 final size:3

Alignment explanation


    Indices: 743--769  Score: 54
    Period size: 3  Copynumber: 9.0  Consensus size: 3

        733 ATAAAAGATG

                                               
        743 TAT TAT TAT TAT TAT TAT TAT TAT TAT
          1 TAT TAT TAT TAT TAT TAT TAT TAT TAT

        770 ATATATATAT


Statistics
Matches: 24,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   3   24  1.00

ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67


Consensus pattern (3 bp):   
TAT

Done.