Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01009518.1 Corchorus olitorius cultivar O-4 contig09550, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 615

Length: 1025
ACGTcount: A:0.37, C:0.11, G:0.13, T:0.39


Found at i:901 original size:38 final size:38

Alignment explanation


    Indices: 834--907  Score: 98
    Period size: 37  Copynumber: 1.9  Consensus size: 38

        824 GAGGTTTTGG

                         *                        
        834 AGAAATATGATAATCAAAATTACAAAAAAG-TGTAATA
          1 AGAAATATGATAACCAAAATTACAAAAAAGATGTAATA

                                      *           
        871 AGAAATATGATAAACCAAAAATT-CACAAAAGATGTAA
          1 AGAAATATGAT-AACC-AAAATTACAAAAAAGATGTAA

        908 GGTTATTGAA


Statistics
Matches: 32,  Mismatches: 2, Indels: 4
        0.84            0.05        0.11

Matches are distributed among these distances:
  37   11  0.34
  38   10  0.31
  39   11  0.34

ACGTcount: A:0.59, C:0.08, G:0.11, T:0.22


Consensus pattern (38 bp):   
AGAAATATGATAACCAAAATTACAAAAAAGATGTAATA
Done.