Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01009526.1 Corchorus olitorius cultivar O-4 contig09558, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7204
ACGTcount: A:0.34, C:0.18, G:0.16, T:0.32


Found at i:3310 original size:13 final size:13

Alignment explanation


    Indices: 3294--3318  Score: 50
    Period size: 13  Copynumber: 1.9  Consensus size: 13

       3284 AAACTTTTAA

                         
       3294 AAAAAAAAAGAAG
          1 AAAAAAAAAGAAG

                        
       3307 AAAAAAAAAGAA
          1 AAAAAAAAAGAA

       3319 TAATACCTGA


Statistics
Matches: 12,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   12  1.00

ACGTcount: A:0.88, C:0.00, G:0.12, T:0.00


Consensus pattern (13 bp):   
AAAAAAAAAGAAG

Found at i:4496 original size:13 final size:13

Alignment explanation


    Indices: 4478--4507  Score: 51
    Period size: 13  Copynumber: 2.3  Consensus size: 13

       4468 CATCACTTAC

                         
       4478 TTTTATTTTTATA
          1 TTTTATTTTTATA

                      *  
       4491 TTTTATTTTTTTA
          1 TTTTATTTTTATA

                
       4504 TTTT
          1 TTTT

       4508 GTAGAACGAG


Statistics
Matches: 16,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  13   16  1.00

ACGTcount: A:0.17, C:0.00, G:0.00, T:0.83


Consensus pattern (13 bp):   
TTTTATTTTTATA
Done.