Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01000953.1 Corchorus olitorius cultivar O-4 contig00953, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 624

Length: 1040
ACGTcount: A:0.33, C:0.22, G:0.21, T:0.24


Found at i:272 original size:35 final size:35

Alignment explanation


    Indices: 232--306  Score: 89
    Period size: 35  Copynumber: 2.1  Consensus size: 35

        222 TGTTTGCGGA

                   **                     *     
        232 AACAATGGTCTGTAATCCTTATA-TTTTATTCTTAG
          1 AACAATGACCTGTAATCCTTA-ACTTTTATCCTTAG

                          *                  * 
        267 AACAATGACCTGTAGTCCTTAACTTTTATCCTTGG
          1 AACAATGACCTGTAATCCTTAACTTTTATCCTTAG

                 
        302 AACAA
          1 AACAA

        307 CGGTTTTATA


Statistics
Matches: 34,  Mismatches: 5, Indels: 2
        0.83            0.12        0.05

Matches are distributed among these distances:
  34    1  0.03
  35   33  0.97

ACGTcount: A:0.31, C:0.19, G:0.12, T:0.39


Consensus pattern (35 bp):   
AACAATGACCTGTAATCCTTAACTTTTATCCTTAG
Done.