Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01009533.1 Corchorus olitorius cultivar O-4 contig09565, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6386
ACGTcount: A:0.32, C:0.21, G:0.22, T:0.25


Found at i:2389 original size:18 final size:18

Alignment explanation


    Indices: 2366--2418  Score: 70
    Period size: 18  Copynumber: 2.9  Consensus size: 18

       2356 TACAGACATG

                    *         
       2366 AACCCTCCGAACCCACCC
          1 AACCCTCCAAACCCACCC

                       *      
       2384 AACCCTCCAAATCCACCC
          1 AACCCTCCAAACCCACCC

                 *     *     
       2402 AACCCCCCAAATCCACC
          1 AACCCTCCAAACCCACC

       2419 AAATTCCCCG


Statistics
Matches: 32,  Mismatches: 3, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
  18   32  1.00

ACGTcount: A:0.32, C:0.58, G:0.02, T:0.08


Consensus pattern (18 bp):   
AACCCTCCAAACCCACCC

Done.