Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01009537.1 Corchorus olitorius cultivar O-4 contig09569, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  9146

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1795--1893
43
2.3
43
82
6
121
52
6
19
22
1.67
1865--1912
21
2.2
22
92
3
80
50
10
18
20
1.76
1980--2051
21
3.5
21
75
16
78
50
8
16
25
1.73
1963--2051
41
2.2
42
82
10
112
50
7
19
22
1.73
1963--2051
21
4.4
19
70
16
63
50
7
19
22
1.73
2079--2164
34
2.5
34
92
3
136
58
2
13
25
1.48
2079--2180
34
2.9
34
84
7
125
58
2
15
22
1.50
2157--2251
27
3.6
27
80
5
88
62
4
20
13
1.48
2272--2338
32
2.0
36
82
11
88
59
4
19
16
1.53
3576--3651
36
2.1
36
97
0
143
18
17
13
51
1.76
4988--5039
14
3.8
13
82
14
61
44
7
11
36
1.70
4988--5044
28
2.1
26
87
12
80
40
7
14
38
1.73
7361--7461
53
1.9
52
84
8
132
34
18
3
42
1.69
7391--7522
24
5.6
24
77
13
98
33
21
3
41
1.71
7421--7481
33
1.9
31
86
6
86
36
18
4
40
1.72
7359--7531
8
22.2
8
69
15
69
31
20
4
42
1.73
7530--7694
55
3.0
55
91
2
253
29
15
21
33
1.94
7735--8041
58
5.2
60
85
7
337
37
13
22
27
1.91

Tables:   1

The End!