Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01009543.1 Corchorus olitorius cultivar O-4 contig09575, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  8367

Tables:   1   

This is table  1  of  1  ( 9 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1313--1409
47
2.1
47
96
0
176
32
6
12
48
1.66
4531--4611
30
2.7
30
94
0
135
23
33
17
25
1.96
4592--4686
48
2.0
49
85
2
129
20
35
17
26
1.95
4877--4919
18
2.3
19
92
4
70
4
27
20
46
1.71
4851--5043
48
4.1
48
78
8
191
8
26
19
46
1.78
6714--6754
19
2.2
19
86
0
55
43
0
43
12
1.41
7497--7552
16
3.5
16
77
18
71
5
12
42
39
1.65
7486--7546
32
1.9
32
93
0
104
9
11
40
37
1.75
7991--8062
31
2.3
31
75
17
78
61
8
4
26
1.43

Tables:   1

The End!