Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01009563.1 Corchorus olitorius cultivar O-4 contig09595, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2385
ACGTcount: A:0.34, C:0.18, G:0.18, T:0.30


Found at i:1774 original size:18 final size:18

Alignment explanation


    Indices: 1751--1790  Score: 71
    Period size: 18  Copynumber: 2.2  Consensus size: 18

       1741 AACTCTTAAT

                              
       1751 AAAAACAACATTAATAAA
          1 AAAAACAACATTAATAAA

                        *     
       1769 AAAAACAACATTGATAAA
          1 AAAAACAACATTAATAAA

                
       1787 AAAA
          1 AAAA

       1791 TTTAAAAAAA


Statistics
Matches: 21,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  18   21  1.00

ACGTcount: A:0.72, C:0.10, G:0.03, T:0.15


Consensus pattern (18 bp):   
AAAAACAACATTAATAAA

Found at i:1788 original size:15 final size:15

Alignment explanation


    Indices: 1746--1775  Score: 51
    Period size: 15  Copynumber: 2.0  Consensus size: 15

       1736 ACAATAACTC

                           
       1746 TTAATAAAAACAACA
          1 TTAATAAAAACAACA

                      *    
       1761 TTAATAAAAAAAACA
          1 TTAATAAAAACAACA

       1776 ACATTGATAA


Statistics
Matches: 14,  Mismatches: 1, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  15   14  1.00

ACGTcount: A:0.70, C:0.10, G:0.00, T:0.20


Consensus pattern (15 bp):   
TTAATAAAAACAACA
Done.