Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01009564.1 Corchorus olitorius cultivar O-4 contig09596, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5798
ACGTcount: A:0.32, C:0.17, G:0.16, T:0.35


Found at i:3579 original size:2 final size:2

Alignment explanation


    Indices: 3572--3608  Score: 58
    Period size: 2  Copynumber: 19.0  Consensus size: 2

       3562 ACGGTTAGAT

                                                      *             
       3572 TA TA TA TA TA TA TA TA TA TA TA TA TA TA GA T- TA TA TA
          1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA

       3609 CTGTTAGATT


Statistics
Matches: 32,  Mismatches: 2, Indels: 2
        0.89            0.06        0.06

Matches are distributed among these distances:
   1    1  0.03
   2   31  0.97

ACGTcount: A:0.49, C:0.00, G:0.03, T:0.49


Consensus pattern (2 bp):   
TA

Done.