Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01009565.1 Corchorus olitorius cultivar O-4 contig09597, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  3534

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2086--2119
12
2.7
13
81
9
52
14
23
0
61
1.33
2170--2289
19
6.4
19
74
18
117
27
18
0
53
1.50
2171--2244
40
1.9
39
86
8
107
25
18
1
54
1.52
2274--2749
27
18.1
27
69
23
272
24
17
0
57
1.45
2279--2444
59
2.8
59
98
0
314
25
17
1
55
1.49
2290--2447
32
5.3
31
65
25
106
24
17
1
56
1.48
2459--2744
28
11.4
23
67
26
115
23
17
0
58
1.41
2342--2593
51
4.9
50
84
12
307
25
17
0
56
1.44
2555--2629
30
2.3
33
76
21
95
18
17
0
64
1.30
2566--2967
47
8.2
47
83
12
422
22
18
0
57
1.45
2439--2723
130
2.2
131
90
6
447
23
17
0
58
1.41
2748--2782
18
1.9
18
94
0
61
25
25
0
48
1.51
2753--2838
18
5.2
17
68
27
60
24
20
0
54
1.45
2567--2966
145
2.7
146
84
9
503
22
18
0
58
1.45
2568--2966
98
4.1
98
83
11
482
22
18
0
57
1.45
2818--2911
27
3.6
29
71
21
98
23
19
1
56
1.48
2843--2890
22
2.2
22
81
3
62
20
18
2
58
1.49
2895--2929
18
1.9
18
100
0
70
28
11
0
60
1.32

Tables:   1

The End!