Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01009566.1 Corchorus olitorius cultivar O-4 contig09598, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4815
ACGTcount: A:0.32, C:0.19, G:0.16, T:0.33


Found at i:3628 original size:6 final size:7

Alignment explanation


    Indices: 3613--3637  Score: 50
    Period size: 7  Copynumber: 3.6  Consensus size: 7

       3603 ACATGGAGAG

                   
       3613 TTTTGTT
          1 TTTTGTT

                   
       3620 TTTTGTT
          1 TTTTGTT

                   
       3627 TTTTGTT
          1 TTTTGTT

                
       3634 TTTT
          1 TTTT

       3638 AAATAACAAG


Statistics
Matches: 18,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   7   18  1.00

ACGTcount: A:0.00, C:0.00, G:0.12, T:0.88


Consensus pattern (7 bp):   
TTTTGTT

Found at i:4114 original size:22 final size:22

Alignment explanation


    Indices: 4082--4137  Score: 94
    Period size: 22  Copynumber: 2.5  Consensus size: 22

       4072 CTATCAGATT

                  *               
       4082 TGCTGACGTGGCGAAGTACTTA
          1 TGCTGATGTGGCGAAGTACTTA

                                  
       4104 TGCTGATGTGGCGAAGTACTTA
          1 TGCTGATGTGGCGAAGTACTTA

              *         
       4126 TGTTGATGTGGC
          1 TGCTGATGTGGC

       4138 ATTTCCACGT


Statistics
Matches: 32,  Mismatches: 2, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  22   32  1.00

ACGTcount: A:0.20, C:0.14, G:0.34, T:0.32


Consensus pattern (22 bp):   
TGCTGATGTGGCGAAGTACTTA
Done.