Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01009567.1 Corchorus olitorius cultivar O-4 contig09599, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 4396
ACGTcount: A:0.35, C:0.14, G:0.16, T:0.35
Found at i:1921 original size:329 final size:330
Alignment explanation
Indices: 30--2906 Score: 2628
Period size: 329 Copynumber: 8.7 Consensus size: 330
20 AGTAACCATC
* * ** *
30 ACGAGAATCTGAATCTTTTTTTTATTTAATTAGAAATTAATTCGG--AAAAATGGAAAAACGATA
1 ACGAGCATCTGAATCTTGTTTCGATTTAATTAGAAATAAATTCGGAAAAAAATGGAAAAA-GATA
* * * * *
93 -TAAGAAACGTGAAAAACCC-TTCATTTTTTTGCCGGTGAAATATATATATTTTTTTTGAGTATT
65 TTAA-AAGCGTG-AAAACCCTTTAATTTTTTTGGCGTTG-AAT-TATATATTTTTTCTGAGTATT
* * * *
156 GTGGCAAAAAATTGAGGGAAAACTTTTTGGGTCAATTTTTGCAAAA-TTTAGCCGATATCGTGT-
126 GTGGCAAAAAATTGAGGAAAAACTTTTCGGGTCAGTTTTTGCAAAATTTTAGCCGAAATCGTGTA
* * * * * * *
219 TCTAACCATCACGGTTTTTGGCTAAAAACGCTTTCC--AGAGCCCCAGTTTAATCTTGCATGATT
191 T-TAACCATCACGGTTTTTGGCTAAAAACGCGTTCCGTA-AACCCGA-CTCAGTTTTGCATGATT
* * * * * * * *
282 TTTGAC-TCAAAGACA-CCTTGAAATATCTAAATTCATCAAAGCGAATCTCAGCTAGATTGGATA
253 TTTGTCGT-AAAGA-ATCCTTGAAATATCTATATTCATCAAACCAAATCTCAGCCACAATGGATT
*
345 TAAGGATTTGTATTT
316 TAAGGATTTGTTTTT
* * * * * **
360 ACGAGCATCTAAATCTTGTTTCGATTTAATTAAAAATTAATTTAGAAAAAAAAAATTAAAAAAAC
1 ACGAGCATCTGAATCTTGTTTCGATTTAATTAGAAA-TAAATTCG--GAAAAAAA-TGGAAAAA-
* * * * *
425 GATATTAGAAGCGTGAAAAGCCCATCAATCTTTTTGGCGTTGAATTATATATTTTTT-TGAATAT
61 GATATTAAAAGCGTGAAAA-CCCTTTAATTTTTTTGGCGTTGAATTATATATTTTTTCTGAGTAT
* ** * *
489 TTTGAAAAAAAATTGAGTAAAAACTTTTCGGGTCA-----T------TTTTAG-CAAAATCGTGT
125 TGTGGCAAAAAATTGAGGAAAAACTTTTCGGGTCAGTTTTTGCAAAATTTTAGCCGAAATCGTGT
* * * * * **** *
542 ACTAACCATTACGGATTTTGGCTAAAAACGCATTTCGGGGCCCCGGCTCAGTTTTGCATGATTTT
190 ATTAACCATCACGGTTTTTGGCTAAAAACGCGTTCCGTAAACCCGACTCAGTTTTGCATGATTTT
* * * * * * * * *
607 TTTGCAG-GAATACTCCTTAAAACATCTATATTCATCTAATCAAATCTCAGCCACAATAGATTTA
255 TGT-C-GTAAAGAATCCTTGAAATATCTATATTCATCAAACCAAATCTCAGCCACAATGGATTTA
* *
671 AGAATTTATTTTT
318 AGGATTTGTTTTT
* * * * *
684 ATGAGCATCTGAATATTGTTTCGATTTACTTAGAAATAAATTCGGGAAAAAAATAGAAAATCGAT
1 ACGAGCATCTGAATCTTGTTTCGATTTAATTAGAAATAAATTC-GGAAAAAAATGGAAAA-AGAT
* * * * *
749 ACTAGAAAG-GAGAAAATCCCTTCAATTTTTTTGGCGTTGATTTATATATGTTTTCTGAGTATTG
64 ATTA-AAAGCGTGAAAA-CCCTTTAATTTTTTTGGCGTTGAATTATATATTTTTTCTGAGTA---
* * ** * *
813 TTTGTGGCAAAGAATTGAGGAAAAA-TTTTCGGGGCAG-CGTTGCAAAATTTTAGCTGAAATCAT
124 -TTGTGGCAAAAAATTGAGGAAAAACTTTTCGGGTCAGTTTTTGCAAAATTTTAGCCGAAATCGT
* * * * * **
876 GCACTAACCATCATGGTTTTTTTTTTTTTGCTAAAAACGCGTTTCG-AGGCCCCGACTCAGTTTT
188 GTATTAACCATCACGG-------TTTTTGGCTAAAAACGCGTTCCGTA-AACCCGACTCAGTTTT
* * * * *
940 GAATGATTTTAGGC-TGAAAGACTCCTTGAAATATCTATATTCATCTAACCAAATCTCAGCCACA
245 GCATGATTTTTGTCGT-AAAGAATCCTTGAAATATCTATATTCATCAAACCAAATCTCAGCCACA
*
1004 ATGGACTTAAGGATTTGTTTTT
309 ATGGATTTAAGGATTTGTTTTT
* * * *
1026 ACAAGCATCTGAATCTTATTTCAATTTAATTAGAAATAAATTCGGAAAAAAATGGGAAAACGATA
1 ACGAGCATCTGAATCTTGTTTCGATTTAATTAGAAATAAATTCGGAAAAAAAT-GGAAAAAGATA
* * * * *
1091 TTAAAAGCGTGAAAACCCTTTGA----TATGGCGTTGAATTATATATTTTTTATAACTATTGTGG
65 TTAAAAGCGTGAAAACCCTTTAATTTTTTTGGCGTTGAATTATATATTTTTTCTGAGTATTGTGG
* * * *
1152 CAAAAATTTGAGGAAAAACCTTTC-GGTTAGTTTTTGCAAAAGTTTAGCCGAAATCGTGTATTAA
130 CAAAAAATTGAGGAAAAACTTTTCGGGTCAGTTTTTGCAAAATTTTAGCCGAAATCGTGTATTAA
* *
1216 CCATCACGGTTTTTGGCTTAAAACGCGTTCCGTAAACCCGACTCAG-TTTGAATGATTTTTGTCG
195 CCATCACGGTTTTTGGCTAAAAACGCGTTCCGTAAACCCGACTCAGTTTTGCATGATTTTTGTCG
* *
1280 TAAAGAATCCTTGAAATATTTATATTCATCAAACCAAATCTCAGCCACATTGGATTTAAGGATTT
260 TAAAGAATCCTTGAAATATCTATATTCATCAAACCAAATCTCAGCCACAATGGATTTAAGGATTT
1345 GTTTTT
325 GTTTTT
* * * ** * *
1351 ACGAGTATCTAAATCTTGTTTTGATTTAATTAGAAATTTATTCTGAAAAAAAAATGGAAAAAAAT
1 ACGAGCATCTGAATCTTGTTTCGATTTAATTAGAAATAAATTC-G-GAAAAAAATGGAAAAAGAT
* * * * * *
1416 CTTTAGAAGTGTGAAAAGCCTGTCAATTTTTTTGGCATTGAATTATATA-TTTTT-TGAGTATTG
64 -ATTAAAAGCGTGAAAACCCT-TTAATTTTTTTGGCGTTGAATTATATATTTTTTCTGAGTATTG
* * * *
1479 TGGCAAAAATTTGAGGAAAAACTTTTCGGGTCAGTCTTTGCAAAACTTTAGCTGAAATCGTGTAT
127 TGGCAAAAAATTGAGGAAAAACTTTTCGGGTCAGTTTTTGCAAAATTTTAGCCGAAATCGTGTAT
* * *
1544 TAACCATCACGGTTTTTGGCTTAAAACGCGTCCCGTAAACCAGACTCAG-TTTG-AGTGATTTTT
192 TAACCATCACGGTTTTTGGCTAAAAACGCGTTCCGTAAACCCGACTCAGTTTTGCA-TGATTTTT
* *
1607 GTCGTAAAGAATCCTTGAAATATCTATATTCATCAAACCAAATCTCAGCCACATTGGATTTATGG
256 GTCGTAAAGAATCCTTGAAATATCTATATTCATCAAACCAAATCTCAGCCACAATGGATTTAAGG
1672 ATTTGTTTTT
321 ATTTGTTTTT
* * * * *
1682 GCGAGCATCTGAATCTTATTTCGATTTAATTACAATTAAATTTGGAAAAAAATGGAAAAAGATAT
1 ACGAGCATCTGAATCTTGTTTCGATTTAATTAGAAATAAATTCGGAAAAAAATGGAAAAAGATAT
* * * *
1747 TAAAAGCGTGAAAACCCTTTAATTCTTTTGTCGTTTAATTATATATTTTTTCTGAGTATTGAGGC
66 TAAAAGCGTGAAAACCCTTTAATTTTTTTGGCGTTGAATTATATATTTTTTCTGAGTATTGTGGC
* * *
1812 AAAAAATTAAGGAAAAACCTTTCGGGTCAGTTTTTGCAAAAATTTAGCCGAAATCGTGTATTAAC
131 AAAAAATTGAGGAAAAACTTTTCGGGTCAGTTTTTGCAAAATTTTAGCCGAAATCGTGTATTAAC
* * * * *
1877 CATCACAGTTTTTGGCTTAAAACGCGTTCCGTAAACCCGACTCAG-TTTGAATGATTTTCGTCAT
196 CATCACGGTTTTTGGCTAAAAACGCGTTCCGTAAACCCGACTCAGTTTTGCATGATTTTTGTCGT
* *
1941 AAAGAATCCTTAAAATATCTATATTCATCAAACCAAATCTCAGCCACATTGGATTTAAGGATTTG
261 AAAGAATCCTTGAAATATCTATATTCATCAAACCAAATCTCAGCCACAATGGATTTAAGGATTTG
2006 TTTTT
326 TTTTT
* * * * * *
2011 ACGAACATTTGAATCTTGTTTTGATTAAATTAGAAATGAATTCGGAAAAAAATGGAAAAA-AAAT
1 ACGAGCATCTGAATCTTGTTTCGATTTAATTAGAAATAAATTCGGAAAAAAATGGAAAAAGATAT
* * * * ** * *
2075 TAGAAGCCTGAAAAGCCCATCAAACTTTTTGGCGTTGAATTATATATTATTTT-TGTGTATTGTC
66 TAAAAGCGTGAAAA-CCCTTTAATTTTTTTGGCGTTGAATTATATATT-TTTTCTGAGTATTGTG
* ** ** * * ** ** *
2139 GCAAAAAATTTA-GAAAAA--AAT--AAT-AATTTTGGTC-AGTTTTTAGCCGAAATCGTAAACT
129 GCAAAAAATTGAGGAAAAACTTTTCGGGTCAGTTTTTG-CAAAATTTTAGCCGAAATCGTGTATT
* ** * *** * *
2197 AACCATCACGGTTCTTGGCTAAAAACGTATTTCG-GGGCTTCGGCTCAGTTTTGCATGATTTTTG
193 AACCATCACGGTTTTTGGCTAAAAACGCGTTCCGTAAAC-CCGACTCAGTTTTGCATGATTTTTG
* * * * * * * *
2261 GCAG-GAATACTCCTAGAAATATCTATATTCATCTAATCAAATCTCAGCCACAATGGATTTAAGA
257 TC-GTAAAGAATCCTTGAAATATCTATATTCATCAAACCAAATCTCAGCCACAATGGATTTAAGG
2325 ATTTGTTTTT
321 ATTTGTTTTT
* * * * * *
2335 ATGAGCATCTGAATATTGTTTCTATTTACTTAGAAATAAATTCGGGAAAAAAATAGAAAATCGAT
1 ACGAGCATCTGAATCTTGTTTCGATTTAATTAGAAATAAATTC-GGAAAAAAATGGAAAA-AGAT
* * * *
2400 ACTAGAAAG-GAGAAAATCCTTTCAATTTTTTTTGGCGTTGATTTATATATTTTTTCTGAGTATT
64 ATTA-AAAGCGTGAAAACCCTTT-AA-TTTTTTTGGCGTTGAATTATATATTTTTTCTGAG---T
* * * ** *
2464 ATTTGTGGC-AAAAATTGAGGAAAAATTTTTCGAGACAG-CATTGCAAAATTTTAGCCGAAATCA
123 A-TTGTGGCAAAAAATTGAGGAAAAACTTTTCGGGTCAGTTTTTGCAAAATTTTAGCCGAAATCG
* * * * * ****
2527 TGCACTAACCATCATGGTTTTTTGGCTAAAAACGCATTTCGGGGCCCCGACTCAGTTTTGCATGA
187 TGTATTAACCATCACGG-TTTTTGGCTAAAAACGCGTTCCGTAAACCCGACTCAGTTTTGCATGA
*** * *
2592 TTAAAAG-C-TGAAAGAATCCTTGAAATATCTATATTCATCTAACCAAATCTCAGCCACAATGGG
251 TT-TTTGTCGT-AAAGAATCCTTGAAATATCTATATTCATCAAACCAAATCTCAGCCACAATGGA
2655 TTTAAGGATTTGTTTTT
314 TTTAAGGATTTGTTTTT
* *
2672 ACGAGCATCTGAATCTTATTTCGATTTAATTAGAAATAAATTCGGAAAAAAAATGGGAAAATGAT
1 ACGAGCATCTGAATCTTGTTTCGATTTAATTAGAAATAAATTCGG-AAAAAAAT-GGAAAAAGAT
* * *
2737 ATTAAAAGCGTGAAAATCATTTAATTTTTTTGGCGTTGAATTATACATTTTTTTTTCTGAGTATT
64 ATTAAAAGCGTGAAAACCCTTTAATTTTTTTGGCGTTGAATTAT--A-TATTTTTTCTGAGTATT
* *
2802 GTGGCAAAAAATTGAGGAAAAACCTTTT-GGGTCAGTTTTTGCAAAACTTTAGCAGAAATCGTGT
126 GTGGCAAAAAATTGAGGAAAAA-CTTTTCGGGTCAGTTTTTGCAAAATTTTAGCCGAAATCGTGT
* * * *
2866 ATTAATCATCATGGTTTTTGGTTTAAAACGCGTTCCGTAAA
190 ATTAACCATCACGGTTTTTGGCTAAAAACGCGTTCCGTAAA
2907 TCTACATTTG
Statistics
Matches: 2082, Mismatches: 362, Indels: 201
0.79 0.14 0.08
Matches are distributed among these distances:
321 51 0.02
322 16 0.01
323 119 0.06
324 204 0.10
325 140 0.07
326 63 0.03
327 62 0.03
328 72 0.03
329 310 0.15
330 70 0.03
331 218 0.10
332 55 0.03
333 38 0.02
334 43 0.02
335 89 0.04
336 146 0.07
337 184 0.09
338 21 0.01
340 10 0.00
341 23 0.01
342 104 0.05
343 44 0.02
ACGTcount: A:0.34, C:0.14, G:0.16, T:0.35
Consensus pattern (330 bp):
ACGAGCATCTGAATCTTGTTTCGATTTAATTAGAAATAAATTCGGAAAAAAATGGAAAAAGATAT
TAAAAGCGTGAAAACCCTTTAATTTTTTTGGCGTTGAATTATATATTTTTTCTGAGTATTGTGGC
AAAAAATTGAGGAAAAACTTTTCGGGTCAGTTTTTGCAAAATTTTAGCCGAAATCGTGTATTAAC
CATCACGGTTTTTGGCTAAAAACGCGTTCCGTAAACCCGACTCAGTTTTGCATGATTTTTGTCGT
AAAGAATCCTTGAAATATCTATATTCATCAAACCAAATCTCAGCCACAATGGATTTAAGGATTTG
TTTTT
Found at i:1934 original size:660 final size:654
Alignment explanation
Indices: 30--2902 Score: 2620
Period size: 660 Copynumber: 4.3 Consensus size: 654
20 AGTAACCATC
* * ** * *
30 ACGAGAATCTGAATCTTTTTTTTATTTAATTAGAAATTAATTCGG---AAAAATGGAAAAACGAT
1 ACGAGCATCTGAATCTTGTTTCGATTTAATTAGAAATAAATTCGGAAAAAAAATGGAAAAA-AAT
* * * * *
92 ATAAGAAACGTGAAAAACCCTTC-ATTTTTTTGCCGGTGAAATATATATATTTTTTTTGAGTATT
65 ATTAGAAGCGTG-AAAAGCCTTCAATTTTTTTGGCGTTG-AAT-TATATA--TTTTTTGAGTATT
* * * * *
156 GTGGCAAAAAATTGAGGGAAAACTTTTTGGGTCAATTTTTGCAAAATTTAGCCGATATCGTGT-T
125 GTGGCAAAAAATTGAGGAAAAACTTTTCGGGTCAGTCTTTGCAAAATTTAGCCGAAATCGTGTAT
* ** * * * *
220 CTAACCATCACGGTTTTTGGCTAAAAACGCTTTCCAGAGCCCCAG-TTTAATCTTGCATGATTTT
190 -TAACCATCACGGTTTTTGGCTAAAAACGCGTTCC-GA-AACCAGACTCAGTTTTGCATGATTTT
* * * * * * * *
284 TGACTCAAAGACA-CCTTGAAATATCTAAATTCATCAAAGCGAATCTCAGCTAGATTGGATATAA
252 TGGCTCAAAGA-ATCCTTGAAATATCTATATTCATCAAACCAAATCTCAGCCACAATGGATTTAA
* * * * * *
348 GGATTTGTATTTACGAGCATCTAAATCTTGTTTCGATTTAATTAAAAATTAATTTAGAAAAAAAA
316 GGATTTGTTTTTACGAGCATCTGAATCTTATTTCGATTTAATTAGAAATAAATTT-G--GAAAAA
* * * *
413 AATTAAAAAAACGATATTAGAAGCGTGAAAAGCCCATCAATCTTTTTGGCGTTGAATTATATATT
378 AA-TAGAAAAA-GATATTAAAAGCGTGAAAA-CCCTTTAATC-TTTTGGCGTTGAATTATATATT
* * ** * *
478 TTTT-TGAATATTTTGAAAAAAAATTGAGTAAAAACTTTTCGGGTCA---TT------TTTAG-C
439 TTTTCTGAGTATTGTGGCAAAAAATTGAGGAAAAACCTTTCGGGTCAGTTTTGCAAAATTTAGCC
* * * * *** *
532 AAAATCGTGTACTAACCATTACGGATTTTGGCTAAAAACGCATTTCGGGGCCCCGGCTCAGTTTT
504 GAAATCGTGTACTAACCATCACGGTTTTTGGCTAAAAACGCATTCCGGAAACCCGACTCAGTTTT
* * * * * * * *
597 GCATGATTTTTTTGCAG-GAATACTCCTTAAAACATCTATATTCATCTAATCAAATCTCAGCCAC
569 GAATGATTTTTGT-C-GTAAAGAATCCTTAAAATATCTATATTCATCAAACCAAATCTCAGCCAC
* * *
661 AATAGATTTAAGAATTTATTTTT
632 AATGGATTTAAGGATTTGTTTTT
* * * * * **
684 ATGAGCATCTGAATATTGTTTCGATTTACTTAGAAATAAATTCGGGAAAAAAATAGAAAATCGAT
1 ACGAGCATCTGAATCTTGTTTCGATTTAATTAGAAATAAATTCGGAAAAAAAATGGAAAA-AAAT
* * * *
749 ACTAGAAAG-GAGAAAATCCCTTCAATTTTTTTGGCGTTGATTTATATATGTTTTCTGAGTATTG
65 ATTAG-AAGCGTGAAAA-GCCTTCAATTTTTTTGGCGTTGAATTATATAT-TTTT-TGAGTA---
* * * * *
813 TTTGTGGCAAAGAATTGAGGAAAAA-TTTTCGGGGCAG-CGTTGCAAAATTTTAGCTGAAATCAT
123 -TTGTGGCAAAAAATTGAGGAAAAACTTTTCGGGTCAGTCTTTGCAAAA-TTTAGCCGAAATCGT
* * * * * ** *
876 GCACTAACCATCATGGTTTTTTTTTTTTTGCTAAAAACGCGTTTCGAGGCCCCGACTCAGTTTTG
186 GTATTAACCATCACGG-------TTTTTGGCTAAAAACGCGTTCCGA-AACCAGACTCAGTTTTG
* * * * *
941 AATGATTTTAGGCTGAAAGACTCCTTGAAATATCTATATTCATCTAACCAAATCTCAGCCACAAT
243 CATGATTTTTGGCTCAAAGAATCCTTGAAATATCTATATTCATCAAACCAAATCTCAGCCACAAT
* * * *
1006 GGACTTAAGGATTTGTTTTTACAAGCATCTGAATCTTATTTCAATTTAATTAGAAATAAATTCGG
308 GGATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTATTTCGATTTAATTAGAAATAAATTTGG
* * * *
1071 AAAAAAATGGGAAAACGATATTAAAAGCGTGAAAACCCTTTGA---TATGGCGTTGAATTATATA
373 AAAAAAAT-AGAAAAAGATATTAAAAGCGTGAAAACCCTTTAATCTTTTGGCGTTGAATTATATA
* * * * *
1133 TTTTTTATAACTATTGTGGCAAAAATTTGAGGAAAAACCTTTC-GGTTAGTTTTTGCAAAAGTTT
437 TTTTTTCTGAGTATTGTGGCAAAAAATTGAGGAAAAACCTTTCGGGTCAG-TTTTGCAAAA-TTT
* * * *
1197 AGCCGAAATCGTGTATTAACCATCACGGTTTTTGGCTTAAAACGCGTTCCGTAAACCCGACTCAG
500 AGCCGAAATCGTGTACTAACCATCACGGTTTTTGGCTAAAAACGCATTCCGGAAACCCGACTCAG
* *
1262 -TTTGAATGATTTTTGTCGTAAAGAATCCTTGAAATATTTATATTCATCAAACCAAATCTCAGCC
565 TTTTGAATGATTTTTGTCGTAAAGAATCCTTAAAATATCTATATTCATCAAACCAAATCTCAGCC
*
1326 ACATTGGATTTAAGGATTTGTTTTT
630 ACAATGGATTTAAGGATTTGTTTTT
* * * ** *
1351 ACGAGTATCTAAATCTTGTTTTGATTTAATTAGAAATTTATTCTGAAAAAAAAATGGAAAAAAAT
1 ACGAGCATCTGAATCTTGTTTCGATTTAATTAGAAATAAATTC-GGAAAAAAAATGGAAAAAAAT
* * *
1416 CTTTAGAAGTGTGAAAAGCCTGTCAATTTTTTTGGCATTGAATTATATATTTTTTGAGTATTGTG
65 -ATTAGAAGCGTGAAAAGCCT-TCAATTTTTTTGGCGTTGAATTATATATTTTTTGAGTATTGTG
* *
1481 GCAAAAATTTGAGGAAAAACTTTTCGGGTCAGTCTTTGCAAAACTTTAGCTGAAATCGTGTATTA
128 GCAAAAAATTGAGGAAAAACTTTTCGGGTCAGTCTTTGCAAAA-TTTAGCCGAAATCGTGTATTA
* * *
1546 ACCATCACGGTTTTTGGCTTAAAACGCGTCCCGTAAACCAGACTCAG-TTTG-AGTGATTTTTGT
192 ACCATCACGGTTTTTGGCTAAAAACGCGTTCCG-AAACCAGACTCAGTTTTGCA-TGATTTTTGG
* *
1609 CGT-AAAGAATCCTTGAAATATCTATATTCATCAAACCAAATCTCAGCCACATTGGATTTATGGA
255 C-TCAAAGAATCCTTGAAATATCTATATTCATCAAACCAAATCTCAGCCACAATGGATTTAAGGA
* * * *
1673 TTTGTTTTTGCGAGCATCTGAATCTTATTTCGATTTAATTACAATTAAATTTGGAAAAAAATGGA
319 TTTGTTTTTACGAGCATCTGAATCTTATTTCGATTTAATTAGAAATAAATTTGGAAAAAAATAGA
* *
1738 AAAAGATATTAAAAGCGTGAAAACCCTTTAATTCTTTTGTCGTTTAATTATATATTTTTTCTGAG
384 AAAAGATATTAAAAGCGTGAAAACCCTTTAA-TCTTTTGGCGTTGAATTATATATTTTTTCTGAG
* *
1803 TATTGAGGCAAAAAATTAAGGAAAAACCTTTCGGGTCAGTTTTTGCAAAAATTTAGCCGAAATCG
448 TATTGTGGCAAAAAATTGAGGAAAAACCTTTCGGGTCAG-TTTTGC-AAAATTTAGCCGAAATCG
* * * * *
1868 TGTATTAACCATCACAGTTTTTGGCTTAAAACGCGTTCCGTAAACCCGACTCAG-TTTGAATGAT
511 TGTACTAACCATCACGGTTTTTGGCTAAAAACGCATTCCGGAAACCCGACTCAGTTTTGAATGAT
* * *
1932 TTTCGTCATAAAGAATCCTTAAAATATCTATATTCATCAAACCAAATCTCAGCCACATTGGATTT
576 TTTTGTCGTAAAGAATCCTTAAAATATCTATATTCATCAAACCAAATCTCAGCCACAATGGATTT
1997 AAGGATTTGTTTTT
641 AAGGATTTGTTTTT
* * * * *
2011 ACGAACATTTGAATCTTGTTTTGATTAAATTAGAAATGAATTCGG-AAAAAAATGGAAAAAAA-A
1 ACGAGCATCTGAATCTTGTTTCGATTTAATTAGAAATAAATTCGGAAAAAAAATGGAAAAAAATA
* * ** * *
2074 TTAGAAGCCTGAAAAGCCCATCAAACTTTTTGGCGTTGAATTATATATTATTTTTGTGTATTGTC
66 TTAGAAGCGTGAAAAG-CCTTCAATTTTTTTGGCGTTGAATTATATA-T-TTTTTGAGTATTGTG
* * * ** **
2139 GCAAAAAATTTAGAAAAAAATAATAATTTTGGTCAG---TT------TTTAGCCGAAATCGTAAA
128 GCAAAAAATTGAGGAAAAACT--T--TTCGGGTCAGTCTTTGCAAAATTTAGCCGAAATCGTGTA
* * ** * *** *
2195 CTAACCATCACGGTTCTTGGCTAAAAACGTATTTCGGGGCTTC-GGCTCAGTTTTGCATGATTTT
189 TTAACCATCACGGTTTTTGGCTAAAAACGCGTTCCGAAAC--CAGACTCAGTTTTGCATGATTTT
*** * * * * *
2259 TGGCAGGAATACTCCTAGAAATATCTATATTCATCTAATCAAATCTCAGCCACAATGGATTTAAG
252 TGGCTCAAAGAATCCTTGAAATATCTATATTCATCAAACCAAATCTCAGCCACAATGGATTTAAG
* * * * * * *
2324 AATTTGTTTTTATGAGCATCTGAATATTGTTTCTATTTACTTAGAAATAAATTCGGGAAAAAAAT
317 GATTTGTTTTTACGAGCATCTGAATCTTATTTCGATTTAATTAGAAATAAATT-TGGAAAAAAAT
* * * * * *
2389 AGAAAATCGATACTAGAAAG-GAGAAAATCCTTTCAATTTTTTTTGGCGTTGATTTATATATTTT
381 AGAAAA-AGATATTA-AAAGCGTGAAAACCCTTT-AA--TCTTTTGGCGTTGAATTATATATTTT
** * * **
2453 TTCTGAGTATTATTTGTGGC-AAAAATTGAGGAAAAATTTTTCGAGACAGCATTGCAAAATTTTA
441 TTCTGAG---TA-TTGTGGCAAAAAATTGAGGAAAAACCTTTCGGGTCAGTTTTGCAAAA-TTTA
* * * * ***
2517 GCCGAAATCATGCACTAACCATCATGGTTTTTTGGCTAAAAACGCATTTCGGGGCCCCGACTCAG
501 GCCGAAATCGTGTACTAACCATCACGG-TTTTTGGCTAAAAACGCATTCCGGAAACCCGACTCAG
* *** * *
2582 TTTTGCATGATTAAAAG-C-TGAAAGAATCCTTGAAATATCTATATTCATCTAACCAAATCTCAG
565 TTTTGAATGATT-TTTGTCGT-AAAGAATCCTTAAAATATCTATATTCATCAAACCAAATCTCAG
*
2645 CCACAATGGGTTTAAGGATTTGTTTTT
628 CCACAATGGATTTAAGGATTTGTTTTT
* **
2672 ACGAGCATCTGAATCTTATTTCGATTTAATTAGAAATAAATTCGGAAAAAAAATGGGAAAATGAT
1 ACGAGCATCTGAATCTTGTTTCGATTTAATTAGAAATAAATTCGGAAAAAAAAT-GGAAAAAAAT
* * * * *
2737 ATTAAAAGCGTGAAAATCATTTAATTTTTTTGGCGTTGAATTATACATTTTTTTTTCTGAGTATT
65 ATTAGAAGCGTGAAAAGCCTTCAATTTTTTTGGCGTTGAATTAT--A--TATTTTT-TGAGTATT
* *
2802 GTGGCAAAAAATTGAGGAAAAACCTTTT-GGGTCAGTTTTTGCAAAACTTTAGCAGAAATCGTGT
125 GTGGCAAAAAATTGAGGAAAAA-CTTTTCGGGTCAGTCTTTGCAAAA-TTTAGCCGAAATCGTGT
* * * *
2866 ATTAATCATCATGGTTTTTGGTTTAAAACGCGTTCCG
188 ATTAACCATCACGGTTTTTGGCTAAAAACGCGTTCCG
2903 TAAATCTACA
Statistics
Matches: 1821, Mismatches: 299, Indels: 180
0.79 0.13 0.08
Matches are distributed among these distances:
651 1 0.00
652 50 0.03
653 110 0.06
654 54 0.03
655 54 0.03
656 185 0.10
657 117 0.06
658 103 0.06
659 119 0.07
660 280 0.15
661 133 0.07
662 64 0.04
663 53 0.03
664 50 0.03
665 16 0.01
666 164 0.09
667 108 0.06
668 68 0.04
669 50 0.03
672 42 0.02
ACGTcount: A:0.34, C:0.14, G:0.16, T:0.35
Consensus pattern (654 bp):
ACGAGCATCTGAATCTTGTTTCGATTTAATTAGAAATAAATTCGGAAAAAAAATGGAAAAAAATA
TTAGAAGCGTGAAAAGCCTTCAATTTTTTTGGCGTTGAATTATATATTTTTTGAGTATTGTGGCA
AAAAATTGAGGAAAAACTTTTCGGGTCAGTCTTTGCAAAATTTAGCCGAAATCGTGTATTAACCA
TCACGGTTTTTGGCTAAAAACGCGTTCCGAAACCAGACTCAGTTTTGCATGATTTTTGGCTCAAA
GAATCCTTGAAATATCTATATTCATCAAACCAAATCTCAGCCACAATGGATTTAAGGATTTGTTT
TTACGAGCATCTGAATCTTATTTCGATTTAATTAGAAATAAATTTGGAAAAAAATAGAAAAAGAT
ATTAAAAGCGTGAAAACCCTTTAATCTTTTGGCGTTGAATTATATATTTTTTCTGAGTATTGTGG
CAAAAAATTGAGGAAAAACCTTTCGGGTCAGTTTTGCAAAATTTAGCCGAAATCGTGTACTAACC
ATCACGGTTTTTGGCTAAAAACGCATTCCGGAAACCCGACTCAGTTTTGAATGATTTTTGTCGTA
AAGAATCCTTAAAATATCTATATTCATCAAACCAAATCTCAGCCACAATGGATTTAAGGATTTGT
TTTT
Found at i:3862 original size:321 final size:316
Alignment explanation
Indices: 2910--4371 Score: 1085
Period size: 321 Copynumber: 4.5 Consensus size: 316
2900 CCGTAAATCT
* * * * *
2910 ACATTTGATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTTGATTTAATTAGAAATTAA
1 ACATTGGATTTAAGGATTTGTTTTTATGAGCATCTGAATATTGTTTCGATTTAATTAGAAATAAA
* * * * *
2975 TTCTGAAAAAAA-AAATGTAAAAAACTTTTAGAAGCGTGAAAAG-CCTGTCAATCTTTTTGGCGT
66 TTCAGAAAAAAAGAAA---AAAAAA-ATTTAAAAGCGTGAAAAGCCCT-TCAATTTTTTTGG-GA
* * * * * * *
3038 TAAATTATATATTCTTCCTGAGTATTGTGGCAAAAAATTCAGAAAAAATTGTTGGGGTCAGTTTT
125 TGATTTATATATTTTTTCTGAGTATTGTGGCAAAAAATTGAGAAAAAATAGTT--GGTCAATTTT
* *
3103 TAGCCGAAATCGTGTACTAACCATCACGATTTTAT--C-ATAAAACGCATTTCGGGACCC--ACT
188 TAGCCGAAATCATGTACTAACCATCACG-GTTTATGGCTA-AAAACGCATTTCGGG-CCCTGACT
* * * *
3163 CAGTTTTGCATGATTTTT-GCAG-ATCGACTCCTTGAAATATCTATATCCATCTAACCAAGTGTC
250 CAGTTTTGCATGATTTTTGGCAGAAT--ACTCCTTGAAATATCTATATTCATCAAACCAAATCTC
*
3226 AGCA
313 AGCC
* * ** * *
3230 ACAATT-GATTTAAGGAATTGCTTTTACAAGCCTCTGAATATTGTTTCAATTTAATTAGAAATAA
1 AC-ATTGGATTTAAGGATTTGTTTTTATGAGCATCTGAATATTGTTTCGATTTAATTAGAAATAA
* * ** * * *
3294 ATTTGAAAAAAAAATGAAAAAAACTATATTAAAAGTGTGAAAAACCCTTCAATTTTTTTGGCATT
65 A-TTCAGAAAAAAA-GAAAAAAAAAAT-TTAAAAGCGTGAAAAGCCCTTCAATTTTTTTGGGA-T
* * * **
3359 GAATTATATATTTTTTCTGAATATAGTGGCAAAAAAATTGAGGAAAACCTTTTCAGATCAGTTTT
126 GATTTATATATTTTTTCTGAGTATTGTGGC-AAAAAATTGA-GAAAA-------A-AT-AGTTGG
* * * * * * * * *
3424 TGCAAAATTTTAGCTGAAATCGTGTACTAACCATCACAGTTTTTTGTTAAAAACGCATTCCGAAG
180 T-C-AATTTTTAGCCGAAATCATGTACTAACCATCACGGTTTATGGCTAAAAACGCATTTCG-GG
* ** * * * * *
3489 CCC-AAGCTCA-AATTGCATGATTTTTGTTGTA-AAGACTCCTCGAAATATTTATATTCATAAAA
242 CCCTGA-CTCAGTTTTGCATGATTTTTG--GCAGAATACTCCTTGAAATATCTATATTCATCAAA
3551 CCAAATCTCAGCC
304 CCAAATCTCAGCC
* * * * * * *
3564 ACATTGGATTTAAGGATTTGTTTTTAGGAACATATGAATCTTGTTTTGATTAAATTAGAAATGAA
1 ACATTGGATTTAAGGATTTGTTTTTATGAGCATCTGAATATTGTTTCGATTTAATTAGAAATAAA
* * *
3629 TTCAGAAAAAAATGGAAAAAAAAAATTTAGAAGCCTGAAAAGCCCATCAATTTTTTTGGTGATGA
66 TTCAGAAAAAAA--GAAAAAAAAAATTTAAAAGCGTGAAAAGCCCTTCAATTTTTTTGG-GATGA
* * * * *
3694 TTTATATTTTTTTTCTGAGTATTGTCGCAAAAAATTTAGAAAAAAAAAATTGGTCAATTTTTAGC
128 TTTATATATTTTTTCTGAGTATTGTGGCAAAAAATTGAG-AAAAAATAGTTGGTCAATTTTTAGC
* * * *
3759 CGAAATCATGTAATAACCATCACGGTTCATGGCTAAAAACGCATTTTGGTGCCCTGGCTCAGTTT
192 CGAAATCATGTACTAACCATCACGGTTTATGGCTAAAAACGCATTTCGG-GCCCTGACTCAGTTT
* * * *
3824 TGCAT-ATTTTTGGCAGGAATACTCCTTGAAATATTTATATTCATCTAATCAAATCTCATCC
256 TGCATGATTTTTGGCA-GAATACTCCTTGAAATATCTATATTCATCAAACCAAATCTCAGCC
* * * *
3885 ACAATGGATTTAAGAATTTGTTTTTATTAGCATCTGAATATTGTTTCGATTTACTTAGAAATAAA
1 ACATTGGATTTAAGGATTTGTTTTTATGAGCATCTGAATATTGTTTCGATTTAATTAGAAATAAA
** * * * * * * * *
3950 TTC-G---AAAA-AAAAACGATA-CTAAAAACGAGAAAATCCCTTCAATTTTTTTGAAGTTGATA
66 TTCAGAAAAAAAGAAAAAAAAAATTTAAAAGCGTGAAAAGCCCTTCAATTTTTTTG-GGATGATT
* * * ** *
4009 TATATATTTTTTCCGAGTATTGTTTGTGGCAAAGAATTGAGGAAAAATTTTCTGGGCAGCATTGC
130 TATATATTTTTTCTGAGTA----TTGTGGCAAAAAATTGAGAAAAAATAGT-TGGTCA--ATT--
* * * * *
4074 AAAACTTTAGCCGAAATCATGCACTAACCATCATGGTTTTTTGGCTAAAAACGCGTTTTGGGGCC
186 -----TTTAGCCGAAATCATGTACTAACCATCACGG-TTTATGGCTAAAAACGC-ATTTCGGGCC
* * *
4139 CTGACTCGGTTTTGCATGATTTTTGGCAGAAACACTCCTTGAAATATCTATATTCATCAAATCAA
244 CTGACTCAGTTTTGCATGATTTTTGGCAG-AATACTCCTTGAAATATCTATATTCATCAAACCAA
4204 ATCTCAGCC
308 ATCTCAGCC
* * * *
4213 ACAATGGATTTAAGAATTTGTTTTTATGAGCATCTGAATATAGTTTCGATTTACTTAGAAATAAA
1 ACATTGGATTTAAGGATTTGTTTTTATGAGCATCTGAATATTGTTTCGATTTAATTAGAAATAAA
* * * * * *
4278 TTCGGGAAAAAAA-AAGGGAAAAAACGATACTAAAAACGAGAAAATCCCTTCAATTTTTTTTGGG
66 TTC-AGAAAAAAAGAA---AAAAAA-AAT-TTAAAAGCGTGAAAAGCCCTTCAA-TTTTTTTGGG
*
4342 ATTGATTTATATATTTTTTCTAAGTATTGT
124 A-TGATTTATATATTTTTTCTGAGTATTGT
4372 TTGTGGCAAA
Statistics
Matches: 908, Mismatches: 163, Indels: 126
0.76 0.14 0.11
Matches are distributed among these distances:
313 47 0.05
314 7 0.01
316 6 0.01
317 24 0.03
319 6 0.01
320 109 0.12
321 181 0.20
322 12 0.01
323 7 0.01
324 1 0.00
325 1 0.00
326 28 0.03
327 34 0.04
328 121 0.13
329 2 0.00
330 8 0.01
331 34 0.04
332 28 0.03
333 89 0.10
334 97 0.11
336 11 0.01
337 1 0.00
339 25 0.03
340 29 0.03
ACGTcount: A:0.35, C:0.14, G:0.15, T:0.35
Consensus pattern (316 bp):
ACATTGGATTTAAGGATTTGTTTTTATGAGCATCTGAATATTGTTTCGATTTAATTAGAAATAAA
TTCAGAAAAAAAGAAAAAAAAAATTTAAAAGCGTGAAAAGCCCTTCAATTTTTTTGGGATGATTT
ATATATTTTTTCTGAGTATTGTGGCAAAAAATTGAGAAAAAATAGTTGGTCAATTTTTAGCCGAA
ATCATGTACTAACCATCACGGTTTATGGCTAAAAACGCATTTCGGGCCCTGACTCAGTTTTGCAT
GATTTTTGGCAGAATACTCCTTGAAATATCTATATTCATCAAACCAAATCTCAGCC
Found at i:4204 original size:328 final size:330
Alignment explanation
Indices: 3753--4395 Score: 963
Period size: 328 Copynumber: 1.9 Consensus size: 330
3743 TTGGTCAATT
* * *
3753 TTTAGCCGAAATCATGTAATAACCATCACGGTTCATGGCTAAAAACGCATTTTGGTGCCCTGGCT
1 TTTAGCCGAAATCATGCAATAACCATCACGGTTCATGGCTAAAAACGCATTTTGGGGCCCTGACT
* * * * *
3818 CAGTTTTGCATATTTTTGGCAGGAATACTCCTTGAAATATTTATATTCATCTAATCAAATCTCAT
66 CAGTTTTGCATATTTTTGGCAGAAACACTCCTTGAAATATCTATATTCATCAAATCAAATCTCAG
* *
3883 CCACAATGGATTTAAGAATTTGTTTTTATTAGCATCTGAATATTGTTTCGATTTACTTAGAAATA
131 CCACAATGGATTTAAGAATTTGTTTTTATGAGCATCTGAATATAGTTTCGATTTACTTAGAAATA
3948 AATTC-G-AAA-AAAAAACGATACTAAAAACGAGAAAATCCCTTCAA-TTTTTTTGA-AGTTGAT
196 AATTCGGAAAAGAAAAAACGATACTAAAAACGAGAAAATCCCTTCAATTTTTTTTGAGA-TTGAT
*
4008 ATATATATTTTTTCCGAGTATTGTTTGTGGCAAAGAATTGAGGAAAAATTTTCTGGGCAGCATTG
260 ATATATATTTTTTCCAAGTATTGTTTGTGGCAAAGAATTGAGGAAAAATTTTCTGGGCAGCATTG
4073 CAAAAC
325 CAAAAC
* * ** *
4079 TTTAGCCGAAATCATGCACTAACCATCATGGTTTTTTGGCTAAAAACGCGTTTTGGGGCCCTGAC
1 TTTAGCCGAAATCATGCAATAACCATCACGG-TTCATGGCTAAAAACGCATTTTGGGGCCCTGAC
*
4144 TCGGTTTTGCATGATTTTTGGCAGAAACACTCCTTGAAATATCTATATTCATCAAATCAAATCTC
65 TCAGTTTTGCAT-ATTTTTGGCAGAAACACTCCTTGAAATATCTATATTCATCAAATCAAATCTC
4209 AGCCACAATGGATTTAAGAATTTGTTTTTATGAGCATCTGAATATAGTTTCGATTTACTTAGAAA
129 AGCCACAATGGATTTAAGAATTTGTTTTTATGAGCATCTGAATATAGTTTCGATTTACTTAGAAA
4274 TAAATTCGGGAAAAAAAAAGGGAAAAAACGATACTAAAAACGAGAAAATCCCTTCAATTTTTTTT
194 TAAATTC-GG-----AAAA--GAAAAAACGATACTAAAAACGAGAAAATCCCTTCAATTTTTTTT
* * * *
4339 GGGATTGATTTATATATTTTTTCTAAGTATTGTTTGTGGCAAATAATTGAGGAAAAA
251 GAGATTGATATATATATTTTTTCCAAGTATTGTTTGTGGCAAAGAATTGAGGAAAAA
4396 A
Statistics
Matches: 281, Mismatches: 21, Indels: 16
0.88 0.07 0.05
Matches are distributed among these distances:
326 28 0.10
327 39 0.14
328 117 0.42
330 1 0.00
336 3 0.01
339 35 0.12
340 57 0.20
341 1 0.00
ACGTcount: A:0.34, C:0.15, G:0.16, T:0.35
Consensus pattern (330 bp):
TTTAGCCGAAATCATGCAATAACCATCACGGTTCATGGCTAAAAACGCATTTTGGGGCCCTGACT
CAGTTTTGCATATTTTTGGCAGAAACACTCCTTGAAATATCTATATTCATCAAATCAAATCTCAG
CCACAATGGATTTAAGAATTTGTTTTTATGAGCATCTGAATATAGTTTCGATTTACTTAGAAATA
AATTCGGAAAAGAAAAAACGATACTAAAAACGAGAAAATCCCTTCAATTTTTTTTGAGATTGATA
TATATATTTTTTCCAAGTATTGTTTGTGGCAAAGAATTGAGGAAAAATTTTCTGGGCAGCATTGC
AAAAC
Found at i:4273 original size:649 final size:644
Alignment explanation
Indices: 2916--4371 Score: 1485
Period size: 649 Copynumber: 2.2 Consensus size: 644
2906 ATCTACATTT
* *
2916 GATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTTGATTTAATTAGAAATTAATTCTGA
1 GATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTTGATTTAATTAGAAATAAATTCAGA
* ** * * * *
2981 AAAAAA--AAATGTAAAAAACTTTTAGAAGCGTGAAAAGCCTGTCAATCTTTTTGGCGTTAAATT
66 AAAAAAGGAAA---AAAAAA-ATTTAGAAGCGTGAAAAGCCCATCAATTTTTTTGG-GATGATTT
* * * *** *
3044 ATATATTCTTCCTGAGTATTGTGGCAAAAAATTCAGAAAAAATTGTTGGGGTCAGTTTTTAGCCG
126 ATATATTTTTTCTGAGTATTGTCGCAAAAAATTCAGAAAAAAAAATT-GGGTCAATTTTTAGCCG
* * * *
3109 AAATCGTGTACTAACCATCACGATTTTATCATAAAACGCATTTCGGGACCCACTCAGTTTTGCAT
190 AAATCATGTAATAACCATCACGAGTTCATCATAAAACGCATTTCGGGACCCACTCAGTTTTGCAT
* * *
3174 GATTTTTGCAGATCGACTCCTTGAAATATCTATATCCATCTAACCAAGTGTCAGCAACAATTGAT
255 GATTTTTGCAGATC-ACTCCTTGAAATATCTATATCCATCTAACCAAATCTCAGCAACAATGGAT
* *
3239 TTAAGGAATTGCTTTTACAAGCCTCTGAATATTGTTTCAATTTAATTAGAAATAAATTTGAAAAA
319 TTAAGGAATTGCTTTTACAAGCATCTGAATATTGTTTCAATTTAATTAGAAATAAATTCGAAAAA
* * * *
3304 AAAATGAAAAAAACTATATTAAAAGTGTGAAAAACCCTTCAATTTTTTTGGCATTGAATTATATA
384 AAAACG---AAAAC-ATA-TAAAAGCGAGAAAAACCCTTCAATTTTTTTGGAATTGAATTATATA
* * * ** *
3369 TTTTTTCTGAATATAGTGGCAAAAAAATTGAGGAAAACCTTTTCAGATCAGTTTTTGCAAAATTT
444 TTTTTTCCGAATATAGTGGCAAAAAAATTGAGGAAAACATTTTCAGAGCAGTCATTGCAAAACTT
* * * *
3434 TAGCTGAAATCGTGTACTAACCATCACAGTTTTTTGTTAAAAACGCATTCCGAAGCCCAAGCTCA
509 TAGCCGAAATCATGCACTAACCATCACAGTTTTTTGCTAAAAACGCATTCCGAAGCCCAAGCTCA
** * *
3499 AATTGCATGATTTTTGTTGTAAAGACTCCTCGAAATATTTATATTCATAAAACCAAATCTCAGCC
574 AATTGCATGATTTTTGCAGTAAACACTCCTCGAAATATCTATATTCATAAAACCAAATCTCAGCC
*
3564 ACATTG
639 ACAATG
* * * * *
3570 GATTTAAGGATTTGTTTTTAGGAACATATGAATCTTGTTTTGATTAAATTAGAAATGAATTCAGA
1 GATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTTGATTTAATTAGAAATAAATTCAGA
*
3635 AAAAAATGGAAAAAAAAAATTTAGAAGCCTGAAAAGCCCATCAATTTTTTTGGTGATGATTTATA
66 AAAAAA-GGAAAAAAAAAATTTAGAAGCGTGAAAAGCCCATCAATTTTTTTGG-GATGATTTATA
* *
3700 TTTTTTTTCTGAGTATTGTCGCAAAAAATTTAGAAAAAAAAAATT-GGTCAATTTTTAGCCGAAA
129 TATTTTTTCTGAGTATTGTCGCAAAAAATTCAG-AAAAAAAAATTGGGTCAATTTTTAGCCGAAA
* *
3764 TCATGTAATAACCATCACG-GTTCATGGC-TAAAAACGCATTTTGGTG-CCCTGGCTCAGTTTTG
193 TCATGTAATAACCATCACGAGTTCAT--CAT-AAAACGCATTTCGG-GACCC--ACTCAGTTTTG
* * * * *
3826 CAT-ATTTTTGGCAGGAAT-ACTCCTTGAAATATTTATATTCATCTAATCAAATCTCATCCACAA
252 CATGATTTTT-GCA-G-ATCACTCCTTGAAATATCTATATCCATCTAACCAAATCTCAGCAACAA
* ** * *
3889 TGGATTTAA-GAATTTGTTTTTATTAGCATCTGAATATTGTTTCGATTTACTTAGAAATAAATTC
314 TGGATTTAAGGAA-TTGCTTTTACAAGCATCTGAATATTGTTTCAATTTAATTAGAAATAAATTC
* *
3953 GAAAAAAAAACG-ATAC-TA-AAAA-CGAGAAAATCCCTTCAATTTTTTT-GAAGTTG-ATATAT
378 GAAAAAAAAACGAAAACATATAAAAGCGAGAAAAACCCTTCAATTTTTTTGGAA-TTGAAT-TAT
* * * * *
4012 ATATTTTTTCCGAGTATTGTTTGTGGC-AAAGAATTGAGGAAAA-ATTTTCTGGGCAG-CATTGC
441 ATATTTTTTCCGA--A-T-ATAGTGGCAAAAAAATTGAGGAAAACATTTTCAGAGCAGTCATTGC
** * ** **
4074 AAAACTTTAGCCGAAATCATGCACTAACCATCATGGTTTTTTGGCTAAAAACGCGTTTTGGGGCC
502 AAAACTTTAGCCGAAATCATGCACTAACCATCACAGTTTTTT-GCTAAAAACGCATTCCGAAGCC
* *** * * *
4139 C-TGACTCGGTTTTGCATGATTTTTGGCAG-AAACACTCCTTGAAATATCTATATTCATCAAATC
566 CAAG-CTC-AAATTGCATGATTTTT-GCAGTAAACACTCCTCGAAATATCTATATTCATAAAACC
4202 AAATCTCAGCCACAATG
628 AAATCTCAGCCACAATG
* * * * * *
4219 GATTTAAGAATTTGTTTTTATGAGCATCTGAATATAGTTTCGATTTACTTAGAAATAAATTCGGG
1 GATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTTGATTTAATTAGAAATAAATTC---
* * ** * * * * * *
4284 AAAAAAAAAGGGAAAAAACGATACTAAAAACGAGAAAATCCCTTCAATTTTTTTTGGGATTGATT
63 AGAAAAAAAGGAAAAAAAAAAT-TTAGAAGCGTGAAAAGCCCATCAA-TTTTTTTGGGA-TGATT
*
4349 TATATATTTTTTCTAAGTATTGT
125 TATATATTTTTTCTGAGTATTGT
4372 TTGTGGCAAA
Statistics
Matches: 664, Mismatches: 108, Indels: 61
0.80 0.13 0.07
Matches are distributed among these distances:
645 4 0.01
646 39 0.06
647 45 0.07
648 30 0.05
649 128 0.19
650 8 0.01
651 17 0.03
652 63 0.09
653 118 0.18
654 89 0.13
655 117 0.18
656 1 0.00
657 5 0.01
ACGTcount: A:0.35, C:0.14, G:0.15, T:0.35
Consensus pattern (644 bp):
GATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTTGATTTAATTAGAAATAAATTCAGA
AAAAAAGGAAAAAAAAAATTTAGAAGCGTGAAAAGCCCATCAATTTTTTTGGGATGATTTATATA
TTTTTTCTGAGTATTGTCGCAAAAAATTCAGAAAAAAAAATTGGGTCAATTTTTAGCCGAAATCA
TGTAATAACCATCACGAGTTCATCATAAAACGCATTTCGGGACCCACTCAGTTTTGCATGATTTT
TGCAGATCACTCCTTGAAATATCTATATCCATCTAACCAAATCTCAGCAACAATGGATTTAAGGA
ATTGCTTTTACAAGCATCTGAATATTGTTTCAATTTAATTAGAAATAAATTCGAAAAAAAAACGA
AAACATATAAAAGCGAGAAAAACCCTTCAATTTTTTTGGAATTGAATTATATATTTTTTCCGAAT
ATAGTGGCAAAAAAATTGAGGAAAACATTTTCAGAGCAGTCATTGCAAAACTTTAGCCGAAATCA
TGCACTAACCATCACAGTTTTTTGCTAAAAACGCATTCCGAAGCCCAAGCTCAAATTGCATGATT
TTTGCAGTAAACACTCCTCGAAATATCTATATTCATAAAACCAAATCTCAGCCACAATG
Done.