Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01009568.1 Corchorus olitorius cultivar O-4 contig09600, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4210
ACGTcount: A:0.37, C:0.14, G:0.15, T:0.33


Found at i:2172 original size:2 final size:2

Alignment explanation


    Indices: 2165--2191  Score: 54
    Period size: 2  Copynumber: 13.5  Consensus size: 2

       2155 CAGGTGCATG

                                                    
       2165 TA TA TA TA TA TA TA TA TA TA TA TA TA T
          1 TA TA TA TA TA TA TA TA TA TA TA TA TA T

       2192 TTCTTTTTCC


Statistics
Matches: 25,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   25  1.00

ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52


Consensus pattern (2 bp):   
TA

Found at i:3536 original size:1 final size:1

Alignment explanation


    Indices: 3530--3558  Score: 58
    Period size: 1  Copynumber: 29.0  Consensus size: 1

       3520 TGGGCCTAAG

                                         
       3530 TTTTTTTTTTTTTTTTTTTTTTTTTTTTT
          1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTT

       3559 ATTTATATGT


Statistics
Matches: 28,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   1   28  1.00

ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00


Consensus pattern (1 bp):   
T

Done.