Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01009570.1 Corchorus olitorius cultivar O-4 contig09602, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5053
ACGTcount: A:0.34, C:0.15, G:0.15, T:0.36


Found at i:2273 original size:27 final size:26

Alignment explanation


    Indices: 2222--2287  Score: 71
    Period size: 27  Copynumber: 2.4  Consensus size: 26

       2212 CATTTTTTTT

                                       
       2222 AAATATATTTCTAAATTGGCATTATCA
          1 AAATATATTT-TAAATTGGCATTATCA

                             *        * 
       2249 AAATATATTTT-AATTATGCATTTATTA
          1 AAATATATTTTAAATT-GGCA-TTATCA

                        
       2276 AAATATAATTTT
          1 AAATAT-ATTTT

       2288 GTGTATCTTT


Statistics
Matches: 34,  Mismatches: 2, Indels: 5
        0.83            0.05        0.12

Matches are distributed among these distances:
  25    4  0.12
  26    4  0.12
  27   21  0.62
  28    5  0.15

ACGTcount: A:0.42, C:0.06, G:0.05, T:0.47


Consensus pattern (26 bp):   
AAATATATTTTAAATTGGCATTATCA

Found at i:4495 original size:2 final size:2

Alignment explanation


    Indices: 4488--4522  Score: 63
    Period size: 2  Copynumber: 18.0  Consensus size: 2

       4478 GCCATACATG

                                                                 
       4488 AT AT AT AT A- AT AT AT AT AT AT AT AT AT AT AT AT AT
          1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT

       4523 CTTGAAATGC


Statistics
Matches: 32,  Mismatches: 0, Indels: 2
        0.94            0.00        0.06

Matches are distributed among these distances:
   1    1  0.03
   2   31  0.97

ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49


Consensus pattern (2 bp):   
AT

Done.