Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01009575.1 Corchorus olitorius cultivar O-4 contig09607, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  7927

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2--45
2
22.0
2
100
0
88
50
0
0
50
1.00
108--206
22
4.6
21
74
9
67
44
12
6
37
1.66
2970--3095
22
5.8
21
73
7
90
40
12
10
36
1.78
2997--3089
44
2.1
43
80
7
107
39
13
10
35
1.80
3014--3097
44
1.9
44
85
0
114
41
11
9
36
1.75
3013--3106
22
4.3
22
75
12
77
39
13
9
37
1.78
3013--3106
44
2.1
43
80
5
107
39
13
9
37
1.78
3093--3125
17
1.9
17
93
0
57
30
15
9
45
1.77
3576--3629
27
2.0
27
85
7
74
44
3
9
42
1.54
3576--3643
27
2.5
26
77
13
66
45
2
8
42
1.50
6781--6836
22
2.5
22
79
0
58
41
14
8
35
1.77
7120--7226
22
4.9
22
76
10
94
37
18
10
33
1.85
7200--7252
26
2.0
27
82
10
65
41
9
7
41
1.66
7295--7486
22
8.5
22
67
11
93
36
14
10
38
1.81
7752--7778
12
2.2
12
100
0
54
48
0
0
51
1.00

Tables:   1

The End!