Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01009577.1 Corchorus olitorius cultivar O-4 contig09609, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 12928
ACGTcount: A:0.35, C:0.17, G:0.17, T:0.31
Found at i:897 original size:4 final size:4
Alignment explanation
Indices: 888--970 Score: 148
Period size: 4 Copynumber: 20.5 Consensus size: 4
878 GTACGGCCCT
*
888 TACA TACA TACA TATA TACA TACA TACA TACA TACA TACA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
936 TACA TACA TACA TACA TACA TACA TACA TAACA TA
1 TACA TACA TACA TACA TACA TACA TACA T-ACA TA
971 TATATATATA
Statistics
Matches: 76, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
4 72 0.95
5 4 0.05
ACGTcount: A:0.51, C:0.23, G:0.00, T:0.27
Consensus pattern (4 bp):
TACA
Found at i:3395 original size:332 final size:331
Alignment explanation
Indices: 2590--3975 Score: 1317
Period size: 332 Copynumber: 4.2 Consensus size: 331
2580 CCAAAAAAAC
* *
2590 TTTCGGCTAAAATTTTACAAAAATTGACGCGGAATA-TTTTTCCTCAATTTTTAACCACAATACT
1 TTTCGGCTAAAATTTTGCAAAAATTGAC-CAGAA-AGTTTTTCCTCAATTTTTAACCACAATACT
* * * *
2654 CATAGAATATGTATAATTTAATGTCAAAAATATTGGAGGACGTTTCACGCTTTACATATCATTTT
64 CATAAAATATATATAATTTAATGTCAAAAAGATTGGAGGACTTTTCACGCTTTACATATCATTTT
* * * * *
2719 TCATATTTTTTATAAATTAATTTCTAATTATATCGAAACAAGATTAAGATGTTTG-AAAAAAGAA
129 TCATATTTTTTATGAATTAATTTCTAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAAA-AA
* * * * *
2783 ATCTTTAAATTCAATGTGGCTGAGATTTAATTAGATGAATGTAGATATTTCAAGGAATCTCGGCA
193 ATC-CTAAATCCAATGTGGCTGAGATTTGATTAGATGAATATAGATATCTCAAGGAATCTCGG-A
* * * * *
2848 -TCAAAAATCATGCAAAA-TTAAGCCGGGGCCCT-GAAACACATTTTTAGCTATAAAACCGTGAT
256 GCCAAAAATCATGCAAAACTT-AGCCGGGGCCCTGGAAA-GCGTTTTTAGCAAAAAAACCGTGAT
*
2910 GGTTAGTACACGA
319 GATTAGTACACGA
* * * ** *
2923 TTTTGGCTAAAATTTTGCAAAGAA-TGACCAAAAAAAATTTTTCCAT-AATTTTTTGTCTA-AAC
1 TTTCGGCTAAAATTTTGCAAA-AATTGACC--AGAAAGTTTTTCC-TCAA-TTTTTAACCACAA-
* **
2985 TACTTATAAAATATATATAATTTAA-CACAAAAAAGATTGGAGGACTTTTCACGCTTTTA-ATAT
60 TACTCATAAAATATATATAATTTAATGTC-AAAAAGATTGGAGGACTTTTCACGC-TTTACATAT
*
3048 CATTTTTCATA--TTTTCTGAATTAATTTCTAATTAAATCGAAACAAGATTCAGATGCTCGTAAA
123 CATTTTTCATATTTTTTATGAATTAATTTCTAATTAAATCGAAACAAGATTCAGATGCTCGTAAA
** * * * * * * *
3111 AAAAAATCCTAAATCCAATGAAGCTGAGATTCGATTACATAAATATGGATATCTCAAAGAGTCTT
188 AAAAAATCCTAAATCCAATGTGGCTGAGATTTGATTAGATGAATATAGATATCTCAAGGAATCTC
* * *
3176 GGAGCCAAAAATCAAGCAAAACTTAGTCGGGGCCCTAGAAAGCGTTTTTAGC-AAAAAACCGTGA
253 GGAGCCAAAAATCATGCAAAACTTAGCCGGGGCCCTGGAAAGCGTTTTTAGCAAAAAAACCGTGA
* *
3240 TGATTATTACACAA
318 TGATTAGTACACGA
* * * *
3254 TTTCGGCTAGAAGTTTGCAAAAATTGACTC-GAAAGTTATTTACTCAATTTTTAGCCACAATACT
1 TTTCGGCTAAAATTTTGCAAAAATTGAC-CAGAAAGTT-TTTCCTCAATTTTTAACCACAATACT
* * * * * *
3318 CATAAAA-ATTATTTAATTCAATAG-CAAAAAGATTGAAGGGCTTTTCATGCTTATA-ATATCGT
64 CATAAAATA-TATATAATTTAAT-GTCAAAAAGATTGGAGGACTTTTCACGCTT-TACATATCAT
* ** * * * * ***
3380 TTTTCCTATTATTTTCCGAGTTAATTTCTAATTAAATCGCAACATGATTCAGATGCTTGT-TTTA
126 TTTTCATATT-TTTTATGAATTAATTTCTAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAA
* * * * * *
3444 CAAACCCTTAAATCCAATGTGGTTGAGATTTGGTTAGATGAATATAGATATTTCAAGGAGTCTCG
190 AAAATCC-TAAATCCAATGTGGCTGAGATTTGATTAGATGAATATAGATATCTCAAGGAATCTCG
* * * * * * * *
3509 GTGCCAAAAATCATGCAACACTGAACCGGGG-TCTCGGAATGCGTTATTAGCAAAAAAATCGTGA
254 GAGCCAAAAATCATGCAAAACTTAGCCGGGGCCCT-GGAAAGCGTTTTTAGCAAAAAAACCGTGA
*
3573 TTTCGACTAACGTACACGA
318 --T-GA-TTA-GTACACGA
* * * * * *
3592 TTTCGACTAAAATTTTGCAAAAAAATGACCAGAAATTTTTTTTTCTCAA-TTTTAACTAAAATAC
1 TTTCGGCTAAAATTTTGC-AAAAATTGACCAGAAA--GTTTTTCCTCAATTTTTAACCACAATAC
* * *
3656 TCATGAAATATATATAATTTAATGTCAAAAAGATTGGAGGACTATTCACACTTTACATATCATTT
63 TCATAAAATATATATAATTTAATGTCAAAAAGATTGGAGGACTTTTCACGCTTTACATATCATTT
* *
3721 TTCATATTTTTTATGAATTAATTTCTAATTAAATCGAAACAAGATTTAGATGCTCATAAAAACAA
128 TTCATATTTTTTATGAATTAATTTCTAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAA-AA
* * * * ** *
3786 ATTCTTAAATGCAATGTGGCTGAGA-TTGATTAGATGAATATGGATATCTCAAGGAATCTTAGCG
192 AATCCTAAATCCAATGTGGCTGAGATTTGATTAGATGAATATAGATATCTCAAGGAATCTCGGAG
* * * * * *
3850 TCAAAAATCATGCAAAAC-TGGCCCAGGACCCTGGAATGCGTTTTTAGC-CAAAAACCGTGATGA
257 CCAAAAATCATGCAAAACTTAG-CCGGGGCCCTGGAAAGCGTTTTTAGCAAAAAAACCGTGATGA
*
3913 TTATTACACGA
321 TTAGTACACGA
* *
3924 TTTCGGTTAAAATTTTGCAAAAATTGACCGGAAAGATATTTT-CTCAATTTTT
1 TTTCGGCTAAAATTTTGCAAAAATTGACCAGAAAG-T-TTTTCCTCAATTTTT
3976 GTGAGATTTG
Statistics
Matches: 849, Mismatches: 157, Indels: 96
0.77 0.14 0.09
Matches are distributed among these distances:
328 3 0.00
329 70 0.08
330 17 0.02
331 75 0.09
332 233 0.27
333 90 0.11
334 24 0.03
335 70 0.08
336 6 0.01
337 12 0.01
338 133 0.16
339 102 0.12
340 12 0.01
341 2 0.00
ACGTcount: A:0.37, C:0.15, G:0.14, T:0.34
Consensus pattern (331 bp):
TTTCGGCTAAAATTTTGCAAAAATTGACCAGAAAGTTTTTCCTCAATTTTTAACCACAATACTCA
TAAAATATATATAATTTAATGTCAAAAAGATTGGAGGACTTTTCACGCTTTACATATCATTTTTC
ATATTTTTTATGAATTAATTTCTAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAAAAAATC
CTAAATCCAATGTGGCTGAGATTTGATTAGATGAATATAGATATCTCAAGGAATCTCGGAGCCAA
AAATCATGCAAAACTTAGCCGGGGCCCTGGAAAGCGTTTTTAGCAAAAAAACCGTGATGATTAGT
ACACGA
Found at i:3897 original size:670 final size:651
Alignment explanation
Indices: 1579--3975 Score: 2205
Period size: 664 Copynumber: 3.6 Consensus size: 651
1569 GTGGCCTTGT
* * * * *
1579 AACGTGTTTTTAGCCAAAAACCGTGATGGTTAGTACACGGTTTCGGCTAGAATTTTGCAAAAATT
1 AACGCGTTTTTAG-CAAAAA-CGTGAT-GATAGTACACGATTTCGGCTAAAATTTTGCAAAAAAT
* * * * * * *
1644 GACCTGAAAGATATTTTCTTAA-TTTTGGCTAAAATACTCATAAAAAATATATAATTCGACATAA
63 GACCAGAAA-ATTTTTTCTCAATTTTTAGCTAAAATACTCATAAAAAATATATAATTCAACGTCA
* * ** * ** *
1708 AAAAGATTGAAGGGCTTTTAACGCTTCTAATATTGTTTTTCCTATTTTTTGCGATTTAATTTCTA
127 AAAAGATTGAAGGACTTTTCACGCTTCTAATATCATTTTTCATATTTTTTATGAATTAATTTCTA
* *
1773 ATTAAATCGAAACAAGATTCAGATGGTCGTAAAAACAAATTCTTAAATCTAATGTGGCTGAGATT
192 ATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATTCTTAAATCCAATGTGGCTGAGATT
* * * * * *
1838 TAGTTAGATTAATATAGATATTTCAAGGAGTCTTGGCACAAAAAAATCATGCAAAACTGAGCCGT
257 GA-TTAGATAAATATAGATATCTCAAGGAGTCTTGGCGC-CAAAAATCATGCAAAACTG-GCCGG
* * * * * *
1903 GCCCCGGAACGCGTTTTTAGCCGAAAACTGTGATAATTAGTACACAATTTCGGCT-AAATTTTGC
319 GCCCTGGAAAGCGTTTTTAGCCAAAAACCGTGATGATTATTACACAATTTCGGCTAAAATTTTGC
* ** * * * * *
1967 AAAAATTTGACCCGAAAGATATTTTCTCGGTTTCTAGCGATAATACTCTTAAAAAATATATAATT
384 AAAAA-TTGACCGGAAAGATATTTTCTCAATTTTTAGCCACAATACTCAT-AAAAATATTTAATT
* * * *
2032 CAACACCAAAAAATTGAAAGCCTTTTTCACGCTTCTAATATCGTTTTTCCTATTTTATTTCCAAA
447 CAATAGCAAAAAATTGAAGGAC-TTTTCACGCTT-TAATATCGTTTTTCCTA-TTT-TTTCCAAA
* * * ** *
2097 TTAATTTATGATTAAATCGAAGCAAGATTTAGAAACTCGTAAAAACAAATCCTTAAATACAATGT
508 TTAATTTCTAATTAAATCGAA-CAAGATTAAGATGCTTGT-AAAACAAATCCTTAAATACAATGT
* * * *
2162 GGTTG-GAATTTGGTTAGATGAATATAGATATATTTTAAGGAGTCTTGACGCCAAAAAACATGCA
571 GGTTGAG-ATTTGGTTAGATGAATATAG--ATATTTCAAGGAGTCTCGGCGCCAAAAATCATGCA
* *
2226 AAATTGACCCAGGGTCCCGG
633 AAA-TGAACCGGGGTCCCGG
* * * * * *
2246 AACGCGTTTTTAGC--CAAC--CATGATGGTACAAGATTTCGGCTAAAATTTTGTAAAAATTGAC
1 AACGCGTTTTTAGCAAAAACGTGATGATAGTACACGATTTCGGCTAAAATTTTGCAAAAAATGAC
* * * *
2307 CCG-AAATATTTTTCTCAATTTTTAGCCACAATACTCA-AAAAAA-ATATAATTCAACGTCAGAA
66 CAGAAAAT-TTTTTCTCAATTTTTAGCTAAAATACTCATAAAAAATATATAATTCAACGTCAAAA
* * * * *
2369 AGATTGAAGGGCTTCTCACGCTTCTAATATCGTTTTCCCTACTTTTTTCA--AATTAATTTCTAA
130 AGATTGAAGGACTTTTCACGCTTCTAATATCATTTTTCATA-TTTTTT-ATGAATTAATTTCTAA
* * * * * *
2432 TTAAATCGAAACATGATTCAAATGCTTGTAAAAACAAATCCTTAAATCCAATGCGGCTAAGATTT
193 TTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATTCTTAAATCCAATGTGGCTGAGA-TT
* * * ** * * * *
2497 GGTTAGATAAATATAGATATTTCAAGGAGTTTTTCCACCAAAAATCATACAAAACTGACCGGGGC
257 GATTAGATAAATATAGATATCTCAAGGAGTCTTGGCGCCAAAAATCATGCAAAACTGGCCGGGCC
* *
2562 CTCGGAAGGCGTTTTTAGCC---AA-----A--A--A--A-AC--TTTCGGCTAAAATTTTACAA
322 CT-GGAAAGCGTTTTTAGCCAAAAACCGTGATGATTATTACACAATTTCGGCTAAAATTTTGCAA
* * *
2610 AAATTGACGCGG-AATAT-TTTTCCTCAATTTTTAACCACAATACTCAT-AGAATATGTATAATT
386 AAATTGAC-CGGAAAGATATTTT-CTCAATTTTTAGCCACAATACTCATAAAAATAT-T-TAATT
* * * * * **
2672 TAAT-GTCAAAAATATTGGAGGACGTTTCACGCTTTACATATCATTTTTCATATTTTTTATAAAT
447 CAATAG-CAAAAA-ATTGAAGGACTTTTCACGCTTTA-ATATCGTTTTTCCTATTTTTTCCAAAT
* * * * * *
2736 TAATTTCTAATTATATCGAAACAAGATTAAGATGTTTGAAAAAAGAAATCTTTAAATTCAATGTG
509 TAATTTCTAATTAAATCG-AACAAGATTAAGATGCTTG-TAAAACAAATCCTTAAATACAATGTG
* ** * * **
2801 GCTGAGATTTAATTAGATGAATGTAGATATTTCAAGGAATCTCGGCATCAAAAATCATGCAAAAT
572 GTTGAGATTTGGTTAGATGAATATAGATATTTCAAGGAGTCTCGGCGCCAAAAATCATGCAAAAT
* *
2866 TAAGCCGGGG-CCCTGA
637 GAA-CCGGGGTCCC-GG
* * * * *
2882 AACACATTTTTAGCTATAAAACCGTGATGGTTAGTACACGATTTTGGCTAAAATTTTGCAAAGAA
1 AACGCGTTTTTAGC-A-AAAA-CGTGAT-GATAGTACACGATTTCGGCTAAAATTTTGCAAAAAA
* * * * * * *
2947 TGACCAAAAAAAATTTTTC-CATAATTTTTTGTCTAAACTACTTATAAAATATATATAATTTAAC
62 TGACC-AGAAAATTTTTTCTC--AATTTTTAG-CTAAAATACTCATAAAAAATATATAATTCAAC
* * * *
3011 -ACAAAAAAGATTGGAGGACTTTTCACGCTTTTAATATCATTTTTCATA--TTTTCTGAATTAAT
123 GTC-AAAAAGATTGAAGGACTTTTCACGCTTCTAATATCATTTTTCATATTTTTTATGAATTAAT
* * **
3073 TTCTAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAA-AAAATCCTAAATCCAATGAAGCTG
187 TTCTAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATTCTTAAATCCAATGTGGCTG
* * * * *
3137 AGATTCGATTACATAAATATGGATATCTCAAAGAGTCTTGGAGCCAAAAATCAAGCAAAACTTAG
252 AGATT-GATTAGATAAATATAGATATCTCAAGGAGTCTTGGCGCCAAAAATCATGCAAAAC-T-G
* * * * * *
3202 TCGGGGCCCTAGAAAGCGTTTTTAGCAAAAAACCGTGATGATTATTACACAATTTCGGCTAGAAG
314 GCCGGGCCCTGGAAAGCGTTTTTAGCCAAAAACCGTGATGATTATTACACAATTTCGGCTAAAAT
* *
3267 TTTGCAAAAATTGACTC-GAAAGTTATTTACTCAATTTTTAGCCACAATACTCATAAAAATTATT
379 TTTGCAAAAATTGAC-CGGAAAGATATTTTCTCAATTTTTAGCCACAATACTCATAAAAA-TATT
* *
3331 TAATTCAATAGCAAAAAGATTGAAGGGCTTTTCATGCTTATAATATCGTTTTTCCTATTATTTTC
442 TAATTCAATAGCAAAAA-ATTGAAGGACTTTTCACGCTT-TAATATCGTTTTTCCTATT-TTTTC
* * * * *** * *
3396 CGAGTTAATTTCTAATTAAATCGCAACATGATTCAGATGCTTGTTTTACAAACCCTTAAATCCAA
504 CAAATTAATTTCTAATTAAATCG-AACAAGATTAAGATGCTTGTAAAACAAATCCTTAAATACAA
*
3461 TGTGGTTGAGATTTGGTTAGATGAATATAGATATTTCAAGGAGTCTCGGTGCCAAAAATCATGCA
568 TGTGGTTGAGATTTGGTTAGATGAATATAGATATTTCAAGGAGTCTCGGCGCCAAAAATCATGCA
* *
3526 ACACTGAACCGGGGTCTCGG
633 A-AATGAACCGGGGTCCCGG
* * *
3546 AATGCGTTATTAGCAAAAAAATCGTGATTTCGACTAACGTACACGATTTCGACTAAAATTTTGCA
1 AACGCGTTTTTAGC--AAAAA-CGTGA--T-GA-T-A-GTACACGATTTCGGCTAAAATTTTGC-
* * * *
3611 AAAAAATGACCAGAAATTTTTTTTTCTCAA-TTTTAACTAAAATACTCATGAAATATATATAATT
56 AAAAAATGACCAGAAA--ATTTTTTCTCAATTTTTAGCTAAAATACTCATAAAAAATATATAATT
* * * * *
3675 TAATGTCAAAAAGATTGGAGGACTATTCACACTT-TACATATCATTTTTCATATTTTTTATGAAT
119 CAACGTCAAAAAGATTGAAGGACTTTTCACGCTTCTA-ATATCATTTTTCATATTTTTTATGAAT
* * *
3739 TAATTTCTAATTAAATCGAAACAAGATTTAGATGCTCATAAAAACAAATTCTTAAATGCAATGTG
183 TAATTTCTAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATTCTTAAATCCAATGTG
* * * * *
3804 GCTGAGATTGATTAGATGAATATGGATATCTCAAGGAATCTTAGCGTCAAAAATCATGCAAAACT
248 GCTGAGATTGATTAGATAAATATAGATATCTCAAGGAGTCTTGGCGCCAAAAATCATGCAAAACT
* * * *
3869 GGCCCAGGACCCTGGAATGCGTTTTTAGCCAAAAACCGTGATGATTATTACACGATTTCGGTTAA
313 GG-CC-GGGCCCTGGAAAGCGTTTTTAGCCAAAAACCGTGATGATTATTACACAATTTCGGCTAA
3934 AATTTTGCAAAAATTGACCGGAAAGATATTTTCTCAATTTTT
376 AATTTTGCAAAAATTGACCGGAAAGATATTTTCTCAATTTTT
3976 GTGAGATTTG
Statistics
Matches: 1395, Mismatches: 251, Indels: 165
0.77 0.14 0.09
Matches are distributed among these distances:
635 5 0.00
636 49 0.04
638 82 0.06
639 12 0.01
640 73 0.05
641 23 0.02
642 2 0.00
643 3 0.00
644 35 0.03
645 9 0.01
646 79 0.06
647 68 0.05
648 14 0.01
649 49 0.04
650 2 0.00
654 2 0.00
655 1 0.00
656 6 0.00
657 34 0.02
658 152 0.11
659 25 0.02
660 51 0.04
661 3 0.00
662 2 0.00
663 2 0.00
664 199 0.14
665 56 0.04
666 6 0.00
667 15 0.01
668 70 0.05
669 36 0.03
670 199 0.14
671 30 0.02
672 1 0.00
ACGTcount: A:0.37, C:0.15, G:0.15, T:0.33
Consensus pattern (651 bp):
AACGCGTTTTTAGCAAAAACGTGATGATAGTACACGATTTCGGCTAAAATTTTGCAAAAAATGAC
CAGAAAATTTTTTCTCAATTTTTAGCTAAAATACTCATAAAAAATATATAATTCAACGTCAAAAA
GATTGAAGGACTTTTCACGCTTCTAATATCATTTTTCATATTTTTTATGAATTAATTTCTAATTA
AATCGAAACAAGATTCAGATGCTCGTAAAAACAAATTCTTAAATCCAATGTGGCTGAGATTGATT
AGATAAATATAGATATCTCAAGGAGTCTTGGCGCCAAAAATCATGCAAAACTGGCCGGGCCCTGG
AAAGCGTTTTTAGCCAAAAACCGTGATGATTATTACACAATTTCGGCTAAAATTTTGCAAAAATT
GACCGGAAAGATATTTTCTCAATTTTTAGCCACAATACTCATAAAAATATTTAATTCAATAGCAA
AAAATTGAAGGACTTTTCACGCTTTAATATCGTTTTTCCTATTTTTTCCAAATTAATTTCTAATT
AAATCGAACAAGATTAAGATGCTTGTAAAACAAATCCTTAAATACAATGTGGTTGAGATTTGGTT
AGATGAATATAGATATTTCAAGGAGTCTCGGCGCCAAAAATCATGCAAAATGAACCGGGGTCCCG
G
Found at i:6550 original size:33 final size:33
Alignment explanation
Indices: 6508--6575 Score: 127
Period size: 33 Copynumber: 2.1 Consensus size: 33
6498 AATAGATCCC
*
6508 TTAAGAAGTTAGCTCTGATACCAATTGTTGGGT
1 TTAAGAAGTTAGCTCCGATACCAATTGTTGGGT
6541 TTAAGAAGTTAGCTCCGATACCAATTGTTGGGT
1 TTAAGAAGTTAGCTCCGATACCAATTGTTGGGT
6574 TT
1 TT
6576 TGGAAGGGTT
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.26, C:0.13, G:0.24, T:0.37
Consensus pattern (33 bp):
TTAAGAAGTTAGCTCCGATACCAATTGTTGGGT
Found at i:12092 original size:29 final size:30
Alignment explanation
Indices: 12060--12129 Score: 79
Period size: 30 Copynumber: 2.4 Consensus size: 30
12050 CGTTTGAACG
*
12060 TTTTGCCCCCTGAACT-TAAATTTTGGACA
1 TTTTGCCCCCTAAACTCTAAATTTTGGACA
** * * *
12089 TTTTATCCTCTAAACTCTCAATTTTGGACG
1 TTTTGCCCCCTAAACTCTAAATTTTGGACA
12119 TTTTGCCCCCT
1 TTTTGCCCCCT
12130 CTCAAACGAT
Statistics
Matches: 31, Mismatches: 9, Indels: 1
0.76 0.22 0.02
Matches are distributed among these distances:
29 12 0.39
30 19 0.61
ACGTcount: A:0.20, C:0.27, G:0.11, T:0.41
Consensus pattern (30 bp):
TTTTGCCCCCTAAACTCTAAATTTTGGACA
Done.